BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg345516

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40580.1 | Symbols:  | Protein kinase superfamily protein | ...   496    1e-139


> AT2G40580.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:16943864-16945003 FORWARD LENGTH=1140
Length=1140

 Score =  496 bits (268),  Expect = 1e-139
 Identities = 431/509 (85%), Gaps = 13/509 (3%)
 Strand=Plus/Plus

Query  4    AAGAAGACAAGTACGCTCAAACATTCCGAGAATCTCGAGAGGGAGCTTAAGACCATGCTT  63
            |||||||||||||| ||| |||| ||| |||||||||||| |||||| | || |||||||
Sbjct  221  AAGAAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTT  280

Query  64   CACTTCCACGCCAATCCC-TCAATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCAAGTT  122
            |  ||||||  ||||||| || || |||| ||||||  ||  ||||||||||||   |  
Sbjct  281  CGTTTCCACAACAATCCCTTC-ATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGAC  339

Query  123  TAACACCAAAAGTGTGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCT  182
            ||||||||||||  ||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct  340  TAACACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCT  399

Query  183  CGACAAGATGATCTCTGATTCCAGAGGGAGACTGCCTGAAGATACTGTCAGACGGGCCAC  242
            | ||||||||||||||||| || |||||||| || ||||||||| ||||||||| |||||
Sbjct  400  CAACAAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCAC  459

Query  243  TCGTATGATCCTGCAAGGACTTAAGGCTCTCCATTCGGAAGGTTACGTCCACTGCGACCT  302
            |||||||||||| |||||||| |||||||| || || |||||||  ||||||||||||||
Sbjct  460  TCGTATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCT  519

Query  303  CAAACCCTCCAATGTATTTGTCTTCCCTTCCAACACTCCTGGAGAACCATGGGATCTCAA  362
            ||| || || |||||| ||||||||||||||||||| | |||||| ||||||||||||||
Sbjct  520  CAAGCCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAA  579

Query  363  GCTTACTGGTTTCGGCTTATCCAAAGAGCCTACTATGGACTCTAGTCTA-TTGTTTCCTG  421
            |||| |||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||
Sbjct  580  GCTTGCTGGTTTCGGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTG  638

Query  422  GAAACACC--GAG---TACATGCCGCCTGAGGCCATTGCGCCGAAAACATTTATTGGCCC  476
            ||| | ||  |||   |||||| ||||||||||||||| || | | |  ||| ||||   
Sbjct  639  GAA-C-CCTTGAGGAGTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGA-  695

Query  477  AG-ATAGATTGATCGGACCAGCCCGTGAT  504
            || | | | ||||||||||||||||||||
Sbjct  696  AGGACAAACTGATCGGACCAGCCCGTGAT  724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28131122320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5