BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345526
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-... 913 0.0
> AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5529534-5534663 FORWARD LENGTH=2352
Length=2352
Score = 913 bits (494), Expect = 0.0
Identities = 542/566 (96%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 714 AGCAACGACGTCAAGCCAGTCTGTAAATGACATTGGAAGCTCTGTTGATGACGAGGAAAA 773
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1032 AGCAACGACGTCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGATGATGAGGAAAA 1091
Query 774 GTCAAATCCTAGTGAATCTTCCCTGGATCGTTTCAGCCTCATTTCTGGAATTTCAGAAGT 833
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1092 GTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTTATTTCTGGAATTTCAGAAGT 1151
Query 834 GCTAAACCTTCTGAAAATTCTTGGAGATGGCCTCAGGCATTTACATATGTACAACTGTCA 893
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1152 GCTAAGCCTTCTGAAAATTCTTGGAGATGGCCACAGGCATTTACATATGTACAAGTGTCA 1211
Query 894 GGAAGCTTTGGTGGTATATCAAAAGCTATCTCAGAAACAATACAATACACACTGGGTTCT 953
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACAATACACACTGGGTTCT 1271
Query 954 CTTGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGCTGACTCTGCCTT 1013
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 CATGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGCTGACTCTTCCTT 1331
Query 1014 TACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATACGTACTCCACTGT 1073
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1332 TACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATACATACTCCACTGT 1391
Query 1074 TCTTCATCACCTGAAAGAAGAGATGAGGTTAGGCTATCTGGCTCAGGAGCTGATTTCAGT 1133
|||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1392 TCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGGAACTGATTTCAGT 1451
Query 1134 TGACCGCCTATCTCCAGAATCCTGGTGTGCTGTTGGGAACTGTTACAGTTTGCGTAAGGA 1193
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1452 TGATCGCCTGTCTCCAGAATCCTGGTGTGCAGTTGGGAACTGTTACAGTTTGCGTAAGGA 1511
Query 1194 TCATTATACTGCTCTCAAAATGTTTCGGAGAGCTATCCAACTGAATGAAAGATTCACATA 1253
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1512 TCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATGAAAGATTCACATA 1571
Query 1254 TGCGCATACCTTTTGTGGTCACGAGT 1279
||| |||||| ||||||| |||||||
Sbjct 1572 TGCACATACCCTTTGTGGCCACGAGT 1597
Score = 688 bits (372), Expect = 0.0
Identities = 465/506 (92%), Gaps = 21/506 (4%)
Strand=Plus/Plus
Query 18 CTTCAAATTGGATCTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGT 77
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CTTTAAGTTGGATCTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGC 284
Query 78 TGAAGATGTTCCTGGTGGTGCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTC 137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGAAGAAGTTCCTGGTGGTGCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTC 344
Query 138 TGGGAGGAACAACAGTTCAATACAACAGTTTAGGATGGCATTGTCATTTGATCCGTTGTG 197
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 TGGGAGGAAGAACTGTTCAATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTG 404
Query 198 TTGGGAAGCATATAGAGAACTTTGTAGTTTAGGTGCCGCTGAAGAATCCTCAACAGTTTT 257
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 405 TTGGGAAGCATATGGAGAACTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTT 464
Query 258 CGGGAATGTTGCTTCCCAGCGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAACTTCTC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 465 CGGGAATGTTGCTTCCCAGCGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAGCTTCTC 524
Query 318 AGAAGGAGCAACCATAGACCAG----C---TT---A-----C---AAAAGATACAAGTTT 359
|||||||||||||||||||||| | || | | |||||||||| ||||
Sbjct 525 AGAAGGAGCAACCATAGACCAGATTACAGATTCTGATAAGGCCTTAAAAGATACAGGTTT 584
Query 360 ATCGCAAACAGAACACTTTCCAGGAGAGAACCAACAAGATCTGAAAACTAAGCAGCAGCC 419
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 585 ATCGCAAACAGAACACATTCCAGGAGAGAACCAACAAGATCTGAAAATTATGCAGCAGCC 644
Query 420 TGGAGCAGATATTCCGCCAGATACTGACAGGCAACTTAATACAAACGGATGGGATTTGTA 479
||||| | |||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
Sbjct 645 TGGAG-A--TATTCCACCAAATACTGACAGGCAACTTAGTACAAACGGATGGGACTTGAA 701
Query 480 CACACCTTCTCAAGTGCTTTTACAGG 505
||||||||||| ||||||||||||||
Sbjct 702 CACACCTTCTCCAGTGCTTTTACAGG 727
Score = 621 bits (336), Expect = 7e-177
Identities = 409/445 (92%), Gaps = 2/445 (0%)
Strand=Plus/Plus
Query 1309 GAGAAATCCGAGTTTGCGCAGCATCAATTTCAACTGGCTCTCCAAATAAATCCAAGATCT 1368
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCTCCAAATAAATCCAAGATCT 1770
Query 1369 TCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTCAAAGAGGAACAATGAGGCG 1428
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1771 TCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTCAAAGAGAAACGATGAGGCG 1830
Query 1429 TTGAGGATGATGGAGAAGGCTGTACTCACTGATGCGAAGAATCCGGTCGCGAAGTACTTC 1488
|||| |||||||||||||||||||||||||||||| ||||||||| || | ||||||| |
Sbjct 1831 TTGATGATGATGGAGAAGGCTGTACTCACTGATGCAAAGAATCCGCTCCCCAAGTACTAC 1890
Query 1489 AAAGCTAATATATTAAATAGTCTCGGTGATTATCACAAAGCCCAGAAAGTTTTAGAAGAG 1548
|| ||| | ||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 1891 AAGGCTCACATATTAACCAGCCTAGGTGATTATCACAAAGCACAGAAAGTTTTAGAAGAG 1950
Query 1549 CTCAAAGAATGTTTTCCTCAAGAGGGCAGTGTCCATGCGTTGCTTGGCAAAACATACAAT 1608
|||||||||||| ||||||||| ||||||||||||| | ||||||||||| |||||||
Sbjct 1951 CTCAAAGAATGTGCTCCTCAAGAAAGCAGTGTCCATGCATCGCTTGGCAAAATATACAAT 2010
Query 1609 CAGCTAAAACAATACGACAAAGCCCTGTTACATTTCGGCATTGCTTTGGATTTAAGCTCT 1668
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2011 CAGCTAAAGCAATACGACAAAGCCGTGTTACATTTCGGCATTGCTTTGGATTTAAGCCCT 2070
Query 1669 TCTCTATCTGATGCTGTCAAGATAAAGGCTTACATGGAGAGGTTGATAG-AGCGAGTCGA 1727
|||| ||||||||||||||||||||||||||||||||||||||||||| | | || |||
Sbjct 2071 TCTCCATCTGATGCTGTCAAGATAAAGGCTTACATGGAGAGGTTGATACTACC-AGACGA 2129
Query 1728 GCTGAAGACGGAGGAGAATTTGTAG 1752
|||| ||||||||| |||||||||
Sbjct 2130 GCTGGTGACGGAGGAAAATTTGTAG 2154
Score = 274 bits (148), Expect = 2e-72
Identities = 171/182 (94%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 503 AGGCTCCAGAAGAATCTGGGCGTCGCCGTAGTGCTAGAATAGCAGCAAGGAAAAAGATTC 562
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 854 AGGCTCAAGAAGAATCTGGGCGCCGCCGTAGTGCTAGAATAGCAGCAAGGAAAAAGAATC 913
Query 563 CTATGTCGCAGTCATTAGGAAAAGATCTCC-ATTGGTTACATCTTTCACCTTCTGAGTCA 621
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 914 CTATGTCGCAGTCATTTGGAAAAGAT-TCCCATTGGTTACATCTTTCACCTTCCGAGTCA 972
Query 622 AACTGTGCACCTTCTCTTTCCTCGGTGATTGGAAAATGCAGAACCCAAAGCAGCAAGGAA 681
|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 973 AACTATGCACCTTCTCTTTCCTCGATGATTGGAAAATGCAGAATCCAAAGCAGCAAAGAA 1032
Query 682 GC 683
||
Sbjct 1033 GC 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5