BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345557
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37930.1 | Symbols: | Protein of unknown function (DUF3527)... 2139 0.0
> AT2G37930.1 | Symbols: | Protein of unknown function (DUF3527)
| chr2:15873117-15874972 FORWARD LENGTH=1773
Length=1773
Score = 2139 bits (1158), Expect = 0.0
Identities = 1456/1595 (91%), Gaps = 39/1595 (2%)
Strand=Plus/Plus
Query 146 GTTTTGGGGTTTTGGATTGGAAGCAGTTCGAGAAATGGAAGGATACTAATGCAGATGGAA 205
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 GTTTTGGGGTTTTGGATTGGAAACAGTTTGAGAAATGGAAGGATACTAATGCAGATGGAA 60
Query 206 CCAAAGAAGCTTGTTGTAGTTATGCGGAAACTGCTGGAAGTTCGTTGGAATTAGATTTAT 265
|||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||
Sbjct 61 CCAAAGAAGCGTGTTGTAGTTACGCGGAAACAGCTGCAAGTTCGTTGGAGCTAGATTTAT 120
Query 266 CAACCGGTGTAGTCAAGAGATTGGAGGTGGATTTGAAGTCTCAACACATGAGGAATCACA 325
| |||||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct 121 CGACCGGTGTTGTCAAAAGATTGGAGGTAGATTCGAAGTCTCAACAAATGAGGAATCAGA 180
Query 326 GTTTCTCACTTAGATCACAAGCATTTTCAGATGCTATGGATGCTGATATAGTGATGAGGA 385
|||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| ||
Sbjct 181 GTTTCTCAGTTAGATCACAAGCATTTTCAGATGCAACGGATGCTGATACAGTGATGA-GA 239
Query 386 -TGGATCAAAAGGGAAAACGAGATCATCAACTTCTGAGTATGAAGCAGAGAGAACATCAA 444
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||
Sbjct 240 GTGGATCAAAAGGGAAAACGAGAGCATCAACTTCTGAGTATGAAGCAGAAAGAAC-T-AA 297
Query 445 GCATCTCCAAGTAATGCCTCTGAGCTTAGCTCTTGTATCTCTCCAGGGTCAGAGACATTT 504
| | | ||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 298 G----T-C-----ATGCCTCTGAGCTTAGCTCGTGTATCTCTCCAGGATCAGAGAAATTT 347
Query 505 AGAACAGTTGAATGTCAAGACAGAAGGCGTGATGTCGAAGGCGAATGTTCAAGTCCGGTA 564
|||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 348 AGAACAGTTGAATGTCAAGACAGAAGGCATGATGTAGAAGGCGAGTGTTCAAGTCCGGTG 407
Query 565 ACTGTAG-TTAAAAGGAACCAAGAGAAACCATGCTTGTTGGATCAAAATATTCCTACTTT 623
| ||| | | |||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 408 AGTGT-GATGGAAAGAAACCAAGAGAAACCATGCTTGTTGGATCAAAACATTCCCACAAT 466
Query 624 GACATCTAAAAAGGAGAGAGATCCTTCCCCTAACCGGAGGTTTAGCTTCAGTTTTAGTCA 683
| |||| |||||||| ||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 467 GTCATCCAAAAAGGAAAGAGATCCTTCACCTAACAGGCGGTTTAGCTTCAGTTTTAGTCA 526
Query 684 GATGAGTAGAAGTTTCAGTACCAAAGAAAGCTCATCGTCATTGTCGAGCATATCTCATGC 743
||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 527 GATGAGTAGAAGTTTCAGTTCCAAAGAAAGCTCATCGTCATTGTCAAGCACATCTCATGC 586
Query 744 TTCAGCTAAATCAGGTCCTTTGACATTCATCGACTCAGTTTACGCCACTAACTCAACAAG 803
||||||||||||||||||||||||||||| | ||||||||||| ||||| |||| || ||
Sbjct 587 TTCAGCTAAATCAGGTCCTTTGACATTCACCAACTCAGTTTACACCACTCACTCGACCAG 646
Query 804 AACGAAGCCGAATGGTCACAACAGAACAAGATCAGGTCCTTTATT-AATACCCAAGACCG 862
||| ||| | ||||||||||||||||| |||||||||||| |||| || |||||||||||
Sbjct 647 AACAAAGTCTAATGGTCACAACAGAACTAGATCAGGTCCTATATTGAA-ACCCAAGACCG 705
Query 863 CAAAAAGA-AATATA-C--CATTACAAGTGGTGGCATCAAAACCTTCCAACACAAGACCA 918
||||| | ||| || | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 706 -AAAAAAATAATGTACCATCATTACAA---GTGGCTTCAAAACCTTCCAACACAAGACCA 761
Query 919 CCAACCATA-GAAAAGAAGCAATGCAGCTCAAGA-TTCCACGCTCTTTTGCAATTCACAT 976
||||||| | |||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 762 CCAACCA-AGGAAAAGAAGCAAAGCAGCTCAAGAGTT-CACGCTCTTTTACAATTCACAT 819
Query 977 TGAGAAAAGGTATCAATTTGTTTCAGTTTGTTGTTGGAGACAACAGCAATAACGTTCTTG 1036
||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 820 TGAGAAAAGGTATCAATCTGTTTCAGTTCGTTGTTGGAGACAACAGCAATAATGTTCTCG 879
Query 1037 CTGCTACCATGAAGAGTTCAGATTCTTCTACACGGTCTTACACATTGTACACCGTCAACG 1096
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CAGCTACCATGAAGAGTTCAGATTCTTCTACACGGTCTTACACATTGTACACCGTCAACG 939
Query 1097 AAGTAAAGAAACA-GAGCGGAAACTGGTTAAGCCGCCACAAGAACGAACATCCATTTGTA 1155
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAGTAAAGAA-CAAGACCGGAAACTGGTTAAGCCGCCACAAGAACGAACATCCATTTGTA 998
Query 1156 CATACAA-CTATCGGTC-AAATGAAGACTGTTACTTCTTCCACAACAGAAACATCAATCC 1213
||||||| | ||||| | ||||||||||||||||| ||| || |||| |||||||||
Sbjct 999 CATACAATC-ATCGG-CGAAATGAAGACTGTTACTACTTTTACTTCAGATTCATCAATCC 1056
Query 1214 AAAAATCAGAATCTGTTTTGTTCGGTGTTGATTCAACCAATGAAGAGCTTGCAGCAATTG 1273
| ||||||||| ||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 1057 ACAAATCAGAAACTGTTTTGTTCGGTGTTGACTCGACTAATGAAGAGCTTGCAGCAATAG 1116
Query 1274 TTCAGACAAGAAACACAACTACAATTATACTCCCAAGTGGAGTTCACACATTGCCTAAAG 1333
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1117 TTCAGACAAGAAACACAACTACAATAATACTCCCAAGTGGAGTTCACACATTGCCTAAAG 1176
Query 1334 ATGGTAATAATGCTCCTCTCCCGTTGATTAACCGGTGGAAATCTGGTGGGGAATGTGACT 1393
| ||||| ||| ||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1177 ACGGTAACAATTCTCCTCTCCCGTTGATTAACCGGTGGAAAACCGGTGGAGAATGTGACT 1236
Query 1394 GCGGTGGTTGGGACATCGGTTGCAAACTCCGTGTCCTGTCTAATAATCATATAAAGTCTC 1453
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 1237 GCGGTGGTTGGGACATCGGTTGCAAACTCCGTGTCCTGTCTTATAATCATACAAAGACTC 1296
Query 1454 AAACTTTCTCAAGCTTTCAATTGTTTGATCAGGAAAGAGACGAGGCAGCTTTCAAAATGG 1513
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1297 AAACTTTGTCAAGCTTTCAATTGTTTGATCAGGAAAGAGACGAGCCAGCTTTCAAAATGG 1356
Query 1514 TGAGCCACGGGGATGAACTCCACTCTGTTGAGTTTGGCTCATCGATCTCTCTCTTGGAAG 1573
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 TGAGCCACGGCGATGAACTCCACTCTGTTGAGTTTGGCTCATCGATCTCTCTCTTGGAAG 1416
Query 1574 CGTTCTTCATTTCGTTAGCAGTAACTAGTCATCAGAGTTGGTGTCAGGAGGAAGAAGAAG 1633
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 CGTTCTTTATTTCGTTAGCAGTAACTAGTCATCAGAGTTGGTGTCAGGAGGAAGAAGAAG 1476
Query 1634 AAGCAGT--T-GTGATCGGAGATGGTTTGTTGAAGAGAGAAACACCGGCGAAATACGCAA 1690
||| ||| | |||||||||||| || |||| |||||||||||||||||||| |||||||
Sbjct 1477 AAGAAGTGGTTGTGATCGGAGATTGTCTGTTAAAGAGAGAAACACCGGCGAAGTACGCAA 1536
Query 1691 CAAACCCACCGGTTTCTCCAATCGGTCGGGTCTAG 1725
| |||||||||||||||||||||||||||||||||
Sbjct 1537 CGAACCCACCGGTTTCTCCAATCGGTCGGGTCTAG 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5