BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345591
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1279 0.0
> AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:16021750-16024854 REVERSE LENGTH=1031
Length=1031
Score = 1279 bits (692), Expect = 0.0
Identities = 930/1040 (89%), Gaps = 36/1040 (3%)
Strand=Plus/Plus
Query 23 TTCTATCTTCTTATTTGCTTTTTACGCAAATGGTCGAAGGAAACGTTG-----A---T-- 72
|||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1 TTCTATCTTCTTATTTGCTTTTTACGCAAATGGTTGAAGGAAACGTTGATTCAATTTTAC 60
Query 73 A--AATTTGATTGTGTTGATATATACAAACAACCCGCTTTCCAACATCCATTGTTGAAAA 130
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAATTTGATTGTGTTGATATATACAAACAACCCGCTTTCCAACATCCATTGTTGAAAA 120
Query 131 ACCACAAGATTCAGGAAAATTTCTGTTTCAACGAAAGCCACAATGTAAAAATTAAATATC 190
||||||||||||||||||||||| |||||| ||||||| | | |||||| |||||||
Sbjct 121 ACCACAAGATTCAGGAAAATTTCAATTTCAATAAAAGCCATATTATAAAAAATAAATAT- 179
Query 191 aaa-aaaaTGATCTAAGTTGTCCAAAAGGAACAGTGCCAATTTTAAAACAAAGAAATGGA 249
||| |||||| ||||||||||||| |||||||||| ||| |||||||||||| |||||||
Sbjct 180 AAAGAAAATGTTCTAAGTTGTCCACAAGGAACAGTTCCAGTTTTAAAACAAAAAAATGGA 239
Query 250 ACTGAAAGCGTTCATCTCAACACAGTCGACTATCCCGGCCAACATTTTGCAACAATCGAG 309
||||||| | ||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 240 ACTGAAATCATTCATCTCAACACAGTCGAGTATCCTGGTCAACATTTTGCAACAATCGAG 299
Query 310 ACCGTTTTGGATGGAAGCATCTATCGGGGAGCAGAAGCTATGATAAGTGTTCATAATGTA 369
||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 300 ACCGTTTTGGATGGAAGTATCTACCGGGGAGCAGAATCTATGATAAGTATTCATAATGTA 359
Query 370 ACAGTACAAAATAACCAATACAGCAAAAGTCAAATTTGGTTAGAGAATGGACCTCGTGGT 429
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 360 ACTGTACAAAATAACCAATATAGCAAAAGTCAAATTTGGTTGGAGAATGGACCTCGAGGT 419
Query 430 GAACTCAATAGCATACAAATTGGTTGGGCGGTGCATCCAAGATTATACGGGGATACTTTG 489
||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAACTTAATAGCATACAATTTGGTTGGGCGGTGCATCCAAGATTATATGGGGATACTTTA 479
Query 490 ACGCGATTTACAATATATTGGACTGCAGATGGATATAAGAAAACGGGGTGTTATAATACA 549
|||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 480 ACGCGACTTACGATATATTGGACTGCAGATGGGTATAAGAAAACTGGGTGTTATAATACA 539
Query 550 AAGTGTCCTGGTTTTGTTATTATAAATCCATTTCCTGTTA-TTGGAA--GCTTTATTAAT 606
|| |||||||| ||||||||||||| || | |||| | | |||||| ||||| | |||
Sbjct 540 AATTGTCCTGGCTTTGTTATTATAAGTCGAGTTCC-GCAAATTGGAATCGCTTT-T-AAT 596
Query 607 AAATCCTCTATTTATGGTGGTAAAGAAACATTTGTTATCATACCACAAGTTTTACAGGAT 666
|||||||||||||||||||||||| | || ||||||||| |||||||||||| ||||||
Sbjct 597 GAATCCTCTATTTATGGTGGTAAAGGATCAGTTGTTATCAGACCACAAGTTTTCCAGGAT 656
Query 667 GGTTTCAGCGGAAATTGGGCACTAAAA-AT-CT-T--TGAT-GAAATAATTGGTTATTGG 720
|||||||| ||||| |||| ||||||| | || | ||| |||||| |||||||||||
Sbjct 657 GGTTTCAGTGGAAACTGGGTACTAAAAGACACTGTCATGAACGAAATAGTTGGTTATTGG 716
Query 721 CCCAAAGAACTATTCACACACTTAAATAAAGGAGCTTCTTTGGTGCGATTTGGAGGAAAT 780
|||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 CCCAAAAAACTATTTACACACTTAAACAAAGGAGCTTCTTTGGTGCGATTTGGAGGAAAT 776
Query 781 ACTTTTACATCTCCAAATGGAATTAGTCCTCCAATGGGAAATGGACATTTTCCGGTTTTT 840
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 ACTTTTACATCTCCGGATGGAATTAGTCCTCCAATGGGAAATGGACATTTTCCGGTTATT 836
Query 841 -GACT-TTCATAAAAGTTCATATTATATTCATGTTAAAGTGAAGAATTCAAATTATCAAC 898
| || || |||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 837 AG-CTATTT-TAAAAGTTCACATTATGTTCATGTTAAAGTTAAGAATTCAAATTATCAAC 894
Query 899 TAGTTGATATTGAA-GATAGGAGAGCAAGGCA-ATATGCAGATTCTTATCAGTGTTATAG 956
|||||||||||||| | |||| ||||||| | ||||||||||||||| || ||||||||
Sbjct 895 TAGTTGATATTGAAAGC-AGGAAAGCAAGG-ATATATGCAGATTCTTACCAATGTTATAG 952
Query 957 ATTATCATACTGGGGTTATTCCAAGCCAAATGGAGTA-GCTTTCTCTTTTGGGGGACCAG 1015
| |||||||||||||||||| |||| ||| ||||||| | ||||||||||||||||||||
Sbjct 953 ACTATCATACTGGGGTTATTTCAAGTCAACTGGAGTAAG-TTTCTCTTTTGGGGGACCAG 1011
Query 1016 GTGGAAACTGTGATATTTGA 1035
||||||| |||| |||||||
Sbjct 1012 GTGGAAAATGTGGTATTTGA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5