BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345604
Length=3081
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27320.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1212 0.0
AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239) ... 824 0.0
AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS... 296 8e-79
AT2G38570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barre... 243 1e-62
> AT2G27320.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:11692884-11694916 FORWARD LENGTH=1273
Length=1273
Score = 1212 bits (656), Expect = 0.0
Identities = 876/979 (89%), Gaps = 28/979 (3%)
Strand=Plus/Plus
Query 532 ATTTTAAAAGATTTCGATTGTGTTGATATATACAAACAACCGGCTTTTCAACATCCATTG 591
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 92 ATTTTAAAAGATTTCGATTGTGTTGATATATACAAACAACCGGCTTTCCAACATCCATTG 151
Query 592 TTGAAACACCACAAGATTCAGGAAAAATTTAATTCGAAA-GAAAGGCTTAGAAGAAAAGA 650
||||||||||||||||||||||||||||| | ||| ||| |||| ||||| |||||||||
Sbjct 152 TTGAAACACCACAAGATTCAGGAAAAATTCAGTTC-AAATGAAAAGCTTAAAAGAAAAGA 210
Query 651 TGAATATCATCAAACAAATGATAAA-AGTTGTCCAAAAGGAACTGTACCAATTTTAAGAC 709
||||||||| | ||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 211 TGAATATCAAC---CAAATGAAAAATA-TTGTCCAAAAGGAACTGTACCAATTTTAAGAC 266
Query 710 AAACAAATGGAATTGAGAGCGTTCATC-TCGACACACTCGAATATCCCGGCCAACATTTT 768
| | |||||||| ||||||| |||||| | |||||| |||||||||| ||||||||||||
Sbjct 267 AGAGAAATGGAACTGAGAGCTTTCATCCT-GACACAGTCGAATATCCTGGCCAACATTTT 325
Query 769 GCAGTAATCGAAAATGTTTTAGATGGGAGCATCTATCGAGGAGCAGGA-GCTATGATAAG 827
|||||| |||||||| | |||||||||||||||||||||||||||| | ||| |||||||
Sbjct 326 GCAGTACTCGAAAATATGTTAGATGGGAGCATCTATCGAGGAGCAG-ACGCTCTGATAAG 384
Query 828 TATTCATAATTTAACTCTACAAAATAACCAATATAGTAAAAATCAAATCTGGTTAGAGAA 887
| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 385 TCTTCATAATTTAACTCTACTGAATAACCAATACAGTAAAGATCAAATCTGGTTAGAGAA 444
Query 888 TGGACCTCGTGATCAACTCAACAGCATACAATTTGGTTTGGCGGTACATCCAAGATTATA 947
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 445 TGGACCTCGTGATCAACTCAATAGCATACAATTTGGTTTGGCGGTGCATCCAAGATTATA 504
Query 948 TGGCGACACTTTCACGCGGTTTACAATATATTGGACTGCAGATGGCTATAAAAGAACTGG 1007
|||||||| ||| ||||| ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 505 TGGCGACAGTTTAACGCGATTTACAATATACTGGACAGGAGATGGCTATAAAAGAACTGG 564
Query 1008 ATGCTATAATACAAAATGTCCTGGCTTCATTACTGTTTCTCGAGTTCCCTTGATAGGAAC 1067
|||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||
Sbjct 565 ATGCTATAATACAAAATGTCCTGGATTCGTTATTGTTTCTCGAGTTCCCTTGATTGGAAC 624
Query 1068 AACGTTTAATGATTCTTCTGTTTATGGTGGTAAAGAAACAGTTTTTACTAAACCGCAAGT 1127
|| ||| |||| ||||||||||||||||||| |||||||||| |||||| ||| ||||
Sbjct 625 AATTTTTGCTGATACTTCTGTTTATGGTGGTAACGAAACAGTTTATACTAATCCGAAAGT 684
Query 1128 TTTTCAGGATGGTTTCAGTGGAAATTGGGTACTAA-AATTATATGAC-GAAGTTATTGGT 1185
|||||||||||||||||| ||||| ||| |||||| ||| || |||| || ||| |||||
Sbjct 685 TTTTCAGGATGGTTTCAGCGGAAACTGGATACTAAGAAT-ATTTGACCGA-GTTGTTGGT 742
Query 1186 TACTGGCCTAAAGAGTTATTTACTCACTTAAATAAAGGAGTTTCTTTGGTACGTTTTGGA 1245
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 743 TACTGGCCTAAAGAGTTATTTACTCACTTAAACAAAGGAGCTTCTTTGGTACGCTTTGGA 802
Query 1246 GGAAATACATTTCCATCTCCGGAGGGAATTAGTCCTCCAATGGGAAATGGCCATTTTCCA 1305
||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 803 GGAAATACATTTCCATCTCCGGACGGATTTAGTCCCCCAATGGGAAATGGATATTTTCC- 861
Query 1306 GT-T-ATCGACTATCATAAAAGTGCACATTTTTCATTTGTCAAAGTTAAGAATTCGAACT 1363
|| | | ||| | | |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 862 GTCTCA-CGATTTTTATAAAAGTTCACATTTTTCAAAGGTCAAAGTTAAGAATTCGAACT 920
Query 1364 ATCAAAGCATCGATATTGAAGATA-AGAAAACAAGACTTTATGCAGATTCTTACCAATGT 1422
|| ||| ||| ||| ||||| | | ||| |||||||| |||||||||||||||||||| |
Sbjct 921 ATGAAACCATTGATTTTGAAAA-ACAGAGAACAAGACGTTATGCAGATTCTTACCAAT-T 978
Query 1423 TATAGACTAACGTATTGGGGTTATAGCAAGTCG-AATGGGGTATCCTTCTCCTT-TGGAG 1480
||||||||||||||||||||||||| | || | ||| | ||||||||||| || |||||
Sbjct 979 TATAGACTAACGTATTGGGGTTATAACCAG-CATAATAGAGTATCCTTCTC-TTATGGAG 1036
Query 1481 GACCAGGTGGA-AATTGTG 1498
||||||||||| ||| |||
Sbjct 1037 GACCAGGTGGACAAT-GTG 1054
Score = 1201 bits (650), Expect = 0.0
Identities = 879/986 (89%), Gaps = 30/986 (3%)
Strand=Plus/Plus
Query 2107 ATTTTAAAAGATTTTGATTGTGTTGATATATATAAACAACCGGCTTTTCAACATCCATTG 2166
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 92 ATTTTAAAAGATTTCGATTGTGTTGATATATACAAACAACCGGCTTTCCAACATCCATTG 151
Query 2167 TTGAAACACCACAAGATCCAGGAAAAAATT-AATTCGAAA-GAAAGGCTTAGAAGAAAAG 2224
||||||||||||||||| |||| ||||||| | ||| ||| |||| ||||| ||||||||
Sbjct 152 TTGAAACACCACAAGATTCAGG-AAAAATTCAGTTC-AAATGAAAAGCTTAAAAGAAAAG 209
Query 2225 ATGAATATCATCAAACAAAT-AATAAA-AGTTGTCCAAAAGGAACTGTACCAATTTTAAG 2282
||| | || ||||| ||||| || ||| | ||||||||||||||||||||||||||||||
Sbjct 210 ATG-A-AT-ATCAACCAAATGAA-AAATA-TTGTCCAAAAGGAACTGTACCAATTTTAAG 264
Query 2283 ACAAACAAATGGAATTGAGAGCGTTCAT-CTCGACACACTCGAATATCCCGGCCAACATT 2341
||| | |||||||| ||||||| ||||| || |||||| |||||||||| ||||||||||
Sbjct 265 ACAGAGAAATGGAACTGAGAGCTTTCATCCT-GACACAGTCGAATATCCTGGCCAACATT 323
Query 2342 TTGCAGTAATCGAAAATGTTTTAGATGGGAGCATCTATCGAGGAGCAGGA-GCTATGATA 2400
|||||||| |||||||| | ||||||||||||||||||||||||||| || ||| |||||
Sbjct 324 TTGCAGTACTCGAAAATATGTTAGATGGGAGCATCTATCGAGGAGCA-GACGCTCTGATA 382
Query 2401 AGTATTCATAATTTAACTCTACAAAATAACCAATATAGTAAAAATCAAATCTGGTTAGAG 2460
||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 383 AGTCTTCATAATTTAACTCTACTGAATAACCAATACAGTAAAGATCAAATCTGGTTAGAG 442
Query 2461 AATGGACCTCGTGATCAACTCAACAGCATACAATTTGGTTTGGCGGTACATCCAAGATTA 2520
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 443 AATGGACCTCGTGATCAACTCAATAGCATACAATTTGGTTTGGCGGTGCATCCAAGATTA 502
Query 2521 TATGGCGACACTTTCACGCGGTTTACAATATATTGGACTGCAGATGGCTATAAAAGAACT 2580
|||||||||| ||| ||||| ||||||||||| ||||| | |||||||||||||||||||
Sbjct 503 TATGGCGACAGTTTAACGCGATTTACAATATACTGGACAGGAGATGGCTATAAAAGAACT 562
Query 2581 GGATGCTATAATACAAAATGTCCTGGCTTCATTACTGTTTCTCGAGTTCCCTTGATAGGA 2640
|||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||
Sbjct 563 GGATGCTATAATACAAAATGTCCTGGATTCGTTATTGTTTCTCGAGTTCCCTTGATTGGA 622
Query 2641 ACAACGTTTAATGATTCTTCTGTTTATGGTGGTAAAGAAACAGTTTTTACTAAACCGCAA 2700
|||| ||| |||| ||||||||||||||||||| |||||||||| |||||| ||| ||
Sbjct 623 ACAATTTTTGCTGATACTTCTGTTTATGGTGGTAACGAAACAGTTTATACTAATCCGAAA 682
Query 2701 GTTTTTCAGGATGGTTTCAGTGGAAATTGGGTACTAA-AATTAAATGACCAAGTTATTGG 2759
|||||||||||||||||||| ||||| ||| |||||| ||| | ||||| |||| ||||
Sbjct 683 GTTTTTCAGGATGGTTTCAGCGGAAACTGGATACTAAGAAT-ATTTGACCGAGTTGTTGG 741
Query 2760 TTACTGGCCTAAAGAGTTATTTACTCACTTAAATAAAGGAGTTTCTTTGGTACGTTTTGG 2819
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 742 TTACTGGCCTAAAGAGTTATTTACTCACTTAAACAAAGGAGCTTCTTTGGTACGCTTTGG 801
Query 2820 AGGAAATACATTTCCATCTCCGGAGGGAATTAGTCCTCCAATGGGAAATGGCCATTTTCC 2879
|||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 802 AGGAAATACATTTCCATCTCCGGACGGATTTAGTCCCCCAATGGGAAATGGATATTTTCC 861
Query 2880 AGT-T-ATCGACTATCATAAAAGTTCACATTTTTCATTTGTCAAAGTTAAGAATTCGAAC 2937
|| | | ||| | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 862 -GTCTCA-CGATTTTTATAAAAGTTCACATTTTTCAAAGGTCAAAGTTAAGAATTCGAAC 919
Query 2938 TATCAAAGCATCGATATTGAAGATA-AGAAAACAAGACTTTATGCAGATTCTTACCAATG 2996
||| ||| ||| ||| ||||| | | ||| |||||||| ||||||||||||||||||||
Sbjct 920 TATGAAACCATTGATTTTGAAAA-ACAGAGAACAAGACGTTATGCAGATTCTTACCAAT- 977
Query 2997 TTATAGACTAACGTATTGGGGTTATAGCAAGTCG-AATGGGGTATCCTTCTCCTT-TGGA 3054
|||||||||||||||||||||||||| | || | ||| | ||||||||||| || ||||
Sbjct 978 TTATAGACTAACGTATTGGGGTTATAACCAG-CATAATAGAGTATCCTTCTC-TTATGGA 1035
Query 3055 GGACCAGGTGGA-AATTGTGGTACTT 3079
|||||||||||| ||| |||||||||
Sbjct 1036 GGACCAGGTGGACAAT-GTGGTACTT 1060
Score = 693 bits (375), Expect = 0.0
Identities = 481/531 (91%), Gaps = 11/531 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTTACATCTAGTTCTCTGTTTATCCTCTTATTTGCTTTTAACTCAAGCGGCCGTT 60
||||||||||||||||| |||||| | | ||||||||||||||||| |||| |||||
Sbjct 17 ATGAGTTTACATCTAGTGCTCTGTCTGTTTTCTTATTTGCTTTTAACACAAGTGGCCGAA 76
Query 61 GGAAGCATTGATCCTATTTTAAAAGATTTCGATTGTGTTGATATATACAAACAACCGGCT 120
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GGAAACATTGATTCAATTTTAAAAGATTTCGATTGTGTTGATATATACAAACAACCGGCT 136
Query 121 TTTCAACATCCATTGTTGAAACACCACAAGATTCAGGAAAAATTTAATTCGAAA-GAAAG 179
|| ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||
Sbjct 137 TTCCAACATCCATTGTTGAAACACCACAAGATTCAGGAAAAATTCAGTTC-AAATGAAAA 195
Query 180 GCTTAGAAGAAAAGATGAATATCATCAAACAAATGATAAA-AGTTGTCCAAAAGGAACTG 238
||||| |||||||||||||||||| | ||||||| ||| | |||||||||||||||||
Sbjct 196 GCTTAAAAGAAAAGATGAATATCAAC---CAAATGAAAAATA-TTGTCCAAAAGGAACTG 251
Query 239 TACCAATTTTAAGACAAAGAAATGGAATTGAGAGCGTTCATC-TCGACACACTCGAATAT 297
|||||||||||||||| |||||||||| ||||||| |||||| | |||||| ||||||||
Sbjct 252 TACCAATTTTAAGACAGAGAAATGGAACTGAGAGCTTTCATCCT-GACACAGTCGAATAT 310
Query 298 CCCGGCCAACATTTTGCAGTAATCGAAAATGTTTTAGATGGGAGCATCTATCGAGGAGCA 357
|| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 311 CCTGGCCAACATTTTGCAGTACTCGAAAATATGTTAGATGGGAGCATCTATCGAGGAGCA 370
Query 358 GGA-GCTATGATAAGTATTCATAATTTAACTCTACAAAATAACCAATATAGTAAAAATCA 416
| | ||| |||||||| |||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 371 G-ACGCTCTGATAAGTCTTCATAATTTAACTCTACTGAATAACCAATACAGTAAAGATCA 429
Query 417 AATCTGGTTAGAGAATGGACCTCGTGATCAACTCAACAGCATACAATTTGGTTTGGCGGT 476
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 430 AATCTGGTTAGAGAATGGACCTCGTGATCAACTCAATAGCATACAATTTGGTTTGGCGGT 489
Query 477 ACATCCAAGATTATATGGCGACACTTTCACGCGGTTTACAATATATTGGAC 527
|||||||||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 490 GCATCCAAGATTATATGGCGACAGTTTAACGCGATTTACAATATACTGGAC 540
> AT2G38255.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:16021750-16024854 REVERSE LENGTH=1031
Length=1031
Score = 824 bits (446), Expect = 0.0
Identities = 817/991 (82%), Gaps = 45/991 (5%)
Strand=Plus/Plus
Query 532 ATTTTAAAAG-ATTTCGATTGTGTTGATATATACAAACAACCGGCTTTTCAACATCCATT 590
|||||| | | |||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 54 ATTTTACAGGAATTT-GATTGTGTTGATATATACAAACAACCCGCTTTCCAACATCCATT 112
Query 591 GTTGAAACACCACAAGATTCAGGAAAAATTT-AA-TTCGAA-AGAAAGGCTTAGAAGAAA 647
||||||| ||||||||||||||| ||||||| || ||| || | |||| | || | |||
Sbjct 113 GTTGAAAAACCACAAGATTCAGG-AAAATTTCAATTTC-AATA-AAAGCCATATTATAAA 169
Query 648 AGATGAATATCATCAAA-CAAATGATAAAAGTTGTCCAAAAGGAACTGTACCAATTTTAA 706
| || || || || ||| ||||| | |||||||||| ||||||| || ||| ||||||
Sbjct 170 AAAT-AA-AT-AT-AAAGAAAATGTTCTAAGTTGTCCACAAGGAACAGTTCCAGTTTTAA 225
Query 707 GACAAACAAATGGAATTGAGAGCGTTCATCTCGACACACTCGAATATCCCGGCCAACATT 766
||||| |||||||| ||| | | |||||||| ||||| |||| ||||| || |||||||
Sbjct 226 AACAAAAAAATGGAACTGAAATCATTCATCTCAACACAGTCGAGTATCCTGGTCAACATT 285
Query 767 TTGCAGTAATCGAAAATGTTTTAGATGGGAGCATCTATCGAGGAGCAGGAGCTATGATAA 826
||||| |||||| | ||||| ||||| || ||||| || ||||||| | |||||||||
Sbjct 286 TTGCAACAATCGAGACCGTTTTGGATGGAAGTATCTACCGGGGAGCAGAATCTATGATAA 345
Query 827 GTATTCATAATTTAACTCTACAAAATAACCAATATAGTAAAAATCAAATCTGGTTAGAGA 886
||||||||||| ||||| ||||||||||||||||||| |||| |||||| ||||| ||||
Sbjct 346 GTATTCATAATGTAACTGTACAAAATAACCAATATAGCAAAAGTCAAATTTGGTTGGAGA 405
Query 887 ATGGACCTCGTGATCAACTCAACAGCATACAATTTGGTTTGGCGGTACATCCAAGATTAT 946
|||||||||| | | |||| || |||||||||||||||| |||||| |||||||||||||
Sbjct 406 ATGGACCTCGAGGTGAACTTAATAGCATACAATTTGGTTGGGCGGTGCATCCAAGATTAT 465
Query 947 ATGGCGACACTTTCACGCGGTTTACAATATATTGGACTGCAGATGGCTATAA-AAGAACT 1005
|||| || ||||| ||||| |||| |||||||||||||||||||| ||||| || ||||
Sbjct 466 ATGGGGATACTTTAACGCGACTTACGATATATTGGACTGCAGATGGGTATAAGAA-AACT 524
Query 1006 GGATGCTATAATACAAAATGTCCTGGCTTCATTACTGTTTCTCGAGTTCC-CTTGATAGG 1064
|| || ||||||||||| ||||||||||| ||| | | ||||||||| | || ||
Sbjct 525 GGGTGTTATAATACAAATTGTCCTGGCTTTGTTATTATAAGTCGAGTTCCGC-AAATTGG 583
Query 1065 AA-CAACGTTTAATGATTCTTCTGTTTATGGTGGTAAAGAAACAGTTTTTACT-AAACCG 1122
|| | | |||||||| || ||| ||||||||||||||| | ||||| ||| | | |||
Sbjct 584 AATC-GCTTTTAATGAATCCTCTATTTATGGTGGTAAAGGATCAGTTGTTA-TCAGACCA 641
Query 1123 CAAGTTTTTCAGGATGGTTTCAGTGGAAATTGGGTACT--AA-A-ATTAT-ATG-ACGAA 1176
|||||||| |||||||||||||||||||| |||||||| || | | | | ||| |||||
Sbjct 642 CAAGTTTTCCAGGATGGTTTCAGTGGAAACTGGGTACTAAAAGACACTGTCATGAACGAA 701
Query 1177 GTTA-TTGGTTACTGGCCTAAAGAGTTATTTACTCACTTAAATAAAGGAGTTTCTTTGGT 1235
|| ||||||| ||||| ||| | ||||||| |||||||| ||||||| |||||||||
Sbjct 702 -ATAGTTGGTTATTGGCCCAAAAAACTATTTACACACTTAAACAAAGGAGCTTCTTTGGT 760
Query 1236 ACGTTTTGGAGGAAATACATTTCCATCTCCGGAGGGAATTAGTCCTCCAATGGGAAATGG 1295
|| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 761 GCGATTTGGAGGAAATACTTTTACATCTCCGGATGGAATTAGTCCTCCAATGGGAAATGG 820
Query 1296 CCATTTTCCAGTTA-TCGACTATCATAAAAGTGCACATT-T-TTCATTTGTCAAAGTTAA 1352
|||||||| |||| | | |||| ||||||| |||||| | |||| ||| ||||||||
Sbjct 821 ACATTTTCCGGTTATTAG-CTATTTTAAAAGTTCACATTATGTTCA--TGTTAAAGTTAA 877
Query 1353 GAATTCGAACTATCAAAGC-A-TCGATATTG-AAGATAAGAAAACAA-GACTTTATGCAG 1408
|||||| || |||| || | | | ||||||| ||| | |||| ||| || | |||||||
Sbjct 878 GAATTCAAATTATC-AA-CTAGTTGATATTGAAAG-CAGGAAAGCAAGGA-TATATGCAG 933
Query 1409 ATTCTTACCAATGTTATAGACTAACGTATTGGGGTTATAGCAAGTCGAA-TGGGGTATCC 1467
||||||||||||||||||||||| | || ||||||||| |||||| || ||| |||
Sbjct 934 ATTCTTACCAATGTTATAGACTATCATACTGGGGTTATTTCAAGTC-AACTGGAGTAAGT 992
Query 1468 TTCTCCTTTGGAGGACCAGGTGGAAATTGTG 1498
||||| ||||| |||||||||||||| ||||
Sbjct 993 TTCTCTTTTGGGGGACCAGGTGGAAAATGTG 1023
Score = 808 bits (437), Expect = 0.0
Identities = 816/994 (82%), Gaps = 45/994 (5%)
Strand=Plus/Plus
Query 2107 ATTTTAAAAGATTTTGATTGTGTTGATATATATAAACAACCGGCTTTTCAACATCCATTG 2166
|||||| | || |||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 54 ATTTTACAGGAATTTGATTGTGTTGATATATACAAACAACCCGCTTTCCAACATCCATTG 113
Query 2167 TTGAAACACCACAAGATCCAGGAAAAAATT-AA-TTCGAA-AGAAAGGCTTAGAAGAAAA 2223
|||||| |||||||||| |||| |||| || || ||| || | |||| | || | ||||
Sbjct 114 TTGAAAAACCACAAGATTCAGG-AAAATTTCAATTTC-AATA-AAAGCCATATTATAAAA 170
Query 2224 GATGAATATCATCAAA-CAAATAATAAAAGTTGTCCAAAAGGAACTGTACCAATTTTAAG 2282
|| || || || ||| |||| | |||||||||| ||||||| || ||| ||||||
Sbjct 171 AAT-AA-AT-AT-AAAGAAAATGTTCTAAGTTGTCCACAAGGAACAGTTCCAGTTTTAAA 226
Query 2283 ACAAACAAATGGAATTGAGAGCGTTCATCTCGACACACTCGAATATCCCGGCCAACATTT 2342
||||| |||||||| ||| | | |||||||| ||||| |||| ||||| || ||||||||
Sbjct 227 ACAAAAAAATGGAACTGAAATCATTCATCTCAACACAGTCGAGTATCCTGGTCAACATTT 286
Query 2343 TGCAGTAATCGAAAATGTTTTAGATGGGAGCATCTATCGAGGAGCAGGAGCTATGATAAG 2402
|||| |||||| | ||||| ||||| || ||||| || ||||||| | ||||||||||
Sbjct 287 TGCAACAATCGAGACCGTTTTGGATGGAAGTATCTACCGGGGAGCAGAATCTATGATAAG 346
Query 2403 TATTCATAATTTAACTCTACAAAATAACCAATATAGTAAAAATCAAATCTGGTTAGAGAA 2462
|||||||||| ||||| ||||||||||||||||||| |||| |||||| ||||| |||||
Sbjct 347 TATTCATAATGTAACTGTACAAAATAACCAATATAGCAAAAGTCAAATTTGGTTGGAGAA 406
Query 2463 TGGACCTCGTGATCAACTCAACAGCATACAATTTGGTTTGGCGGTACATCCAAGATTATA 2522
||||||||| | | |||| || |||||||||||||||| |||||| ||||||||||||||
Sbjct 407 TGGACCTCGAGGTGAACTTAATAGCATACAATTTGGTTGGGCGGTGCATCCAAGATTATA 466
Query 2523 TGGCGACACTTTCACGCGGTTTACAATATATTGGACTGCAGATGGCTATAA-AAGAACTG 2581
||| || ||||| ||||| |||| |||||||||||||||||||| ||||| || |||||
Sbjct 467 TGGGGATACTTTAACGCGACTTACGATATATTGGACTGCAGATGGGTATAAGAA-AACTG 525
Query 2582 GATGCTATAATACAAAATGTCCTGGCTTCATTACTGTTTCTCGAGTTCC-CTTGATAGGA 2640
| || ||||||||||| ||||||||||| ||| | | ||||||||| | || |||
Sbjct 526 GGTGTTATAATACAAATTGTCCTGGCTTTGTTATTATAAGTCGAGTTCCGC-AAATTGGA 584
Query 2641 A-CAACGTTTAATGATTCTTCTGTTTATGGTGGTAAAGAAACAGTTTTTACT-AAACCGC 2698
| | | |||||||| || ||| ||||||||||||||| | ||||| ||| | | ||| |
Sbjct 585 ATC-GCTTTTAATGAATCCTCTATTTATGGTGGTAAAGGATCAGTTGTTA-TCAGACCAC 642
Query 2699 AAGTTTTTCAGGATGGTTTCAGTGGAAATTGGGTACT--AA-A-A-T-TAAATG-ACCAA 2751
||||||| |||||||||||||||||||| |||||||| || | | | | ||| || ||
Sbjct 643 AAGTTTTCCAGGATGGTTTCAGTGGAAACTGGGTACTAAAAGACACTGT-CATGAACGAA 701
Query 2752 GTTA-TTGGTTACTGGCCTAAAGAGTTATTTACTCACTTAAATAAAGGAGTTTCTTTGGT 2810
|| ||||||| ||||| ||| | ||||||| |||||||| ||||||| |||||||||
Sbjct 702 -ATAGTTGGTTATTGGCCCAAAAAACTATTTACACACTTAAACAAAGGAGCTTCTTTGGT 760
Query 2811 ACGTTTTGGAGGAAATACATTTCCATCTCCGGAGGGAATTAGTCCTCCAATGGGAAATGG 2870
|| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 761 GCGATTTGGAGGAAATACTTTTACATCTCCGGATGGAATTAGTCCTCCAATGGGAAATGG 820
Query 2871 CCATTTTCCAGTTA-TCGACTATCATAAAAGTTCACATT-T-TTCATTTGTCAAAGTTAA 2927
|||||||| |||| | | |||| |||||||||||||| | |||| ||| ||||||||
Sbjct 821 ACATTTTCCGGTTATTAG-CTATTTTAAAAGTTCACATTATGTTCA--TGTTAAAGTTAA 877
Query 2928 GAATTCGAACTATCAAAGC-A-TCGATATTG-AAGATAAGAAAACAA-GACTTTATGCAG 2983
|||||| || |||| || | | | ||||||| ||| | |||| ||| || | |||||||
Sbjct 878 GAATTCAAATTATC-AA-CTAGTTGATATTGAAAG-CAGGAAAGCAAGGA-TATATGCAG 933
Query 2984 ATTCTTACCAATGTTATAGACTAACGTATTGGGGTTATAGCAAGTCGAA-TGGGGTATCC 3042
||||||||||||||||||||||| | || ||||||||| |||||| || ||| |||
Sbjct 934 ATTCTTACCAATGTTATAGACTATCATACTGGGGTTATTTCAAGTC-AACTGGAGTAAGT 992
Query 3043 TTCTCCTTTGGAGGACCAGGTGGAAATTGTGGTA 3076
||||| ||||| |||||||||||||| |||||||
Sbjct 993 TTCTCTTTTGGGGGACCAGGTGGAAAATGTGGTA 1026
> AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS
| chr2:16134638-16136695 FORWARD LENGTH=1677
Length=1677
Score = 296 bits (160), Expect = 8e-79
Identities = 176/183 (96%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 1921 AGCCTCTATGTCTTAACATGGTCTCATGAAATACAAAGACACACAGAGATCTCCTTAACA 1980
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 1352 AGCCTCTATGTCTTAACATGGTCTCATGAAATA-AAAG--ACACAGAGATCTCCTCAACA 1296
Query 1981 GAACTTCCAGTGGTTGTCACAGTTAACACATGTAACATAGGTCGTCATTGGCTCATCAAC 2040
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1295 GAACTTCCAGTGGTTGTCACAGTTAACACATGTAACATAAGTCGTCATTGGCTCATCAGC 1236
Query 2041 ACTTCTTGTTTGCATCTGATAGTAGGTGCATTTGCGTTGACCACACCGCCCGCACTTGAA 2100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1235 ACTTCTTGTTTGCATCTGATAGTAGGTGCATTTGCGCTGACCACACCGCCCGCACTTGAA 1176
Query 2101 CTG 2103
|||
Sbjct 1175 CTG 1173
> AT2G38570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barrel-like
(InterPro:IPR011033); Has 300 Blast hits to 300 proteins
in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0;
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128
(source: NCBI BLink). | chr2:16136689-16138886 REVERSE LENGTH=1298
Length=1298
Score = 243 bits (131), Expect = 1e-62
Identities = 215/254 (85%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 1673 TCTTTTGTTTGAGTTCATCATCACTACCTAATGAAGAAGATGTAGTGCATCAAACAGTGG 1732
||| ||| |||||||| | |||||| |||||||||||||||||||||||||||| ||||
Sbjct 343 TCTGTTGCTTGAGTTC-T--TCACTATCTAATGAAGAAGATGTAGTGCATCAAACTGTGG 399
Query 1733 AAAGTGATAGTCCAGAATTACCTGGAGAAAATGATTTGATTCGAGTAGTTGGTGATAATG 1792
||||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||
Sbjct 400 GGAGTGATAGTGTAGAATTACCTGGAGAAAGTGATTTGGTTCGACTAGTAGGTGATAATG 459
Query 1793 ATCTGAGTAACACTGGCTCGAAAGGTTTCAAACAGACGACGACAAGATCGAATCTTGTTG 1852
||||||| | || || ||| ||| ||||| ||| ||||||||||||||||||||||||
Sbjct 460 ATCTGAGCATTACGGGTTCGCGAGGATTCAAGCAGTCGACGACAAGATCGAATCTTGTTG 519
Query 1853 CTAAACAAGTTTTTAGTATGCAATCAGCTCTGCA-TCTAGGATTTGTCTCTC-G----GG 1906
|||| |||||| ||||||| ||||||||| || | | |||||||| |||||| | ||
Sbjct 520 CTAAGCAAGTTGTTAGTATACAATCAGCTTTG-AGTTTAGGATTTATCTCTCAGCTTTGG 578
Query 1907 -TTGACACTACTTC 1919
|||||||||||||
Sbjct 579 GTTGACACTACTTC 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153209843922
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5