BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345623
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 597 4e-170
> AT2G38430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54310.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:16092939-16095031 REVERSE LENGTH=1263
Length=1263
Score = 597 bits (323), Expect = 4e-170
Identities = 389/421 (92%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 268 AAGGATCTCGACATGAGACTGATGCT-AGCCGCTAAGAGGAAAATAACGTATCTCAGCGA 326
||| |||||||||||||||| | ||| | ||||||||||| |||||||||||||||| ||
Sbjct 830 AAGAATCTCGACATGAGACTAACGCTCA-CCGCTAAGAGGGAAATAACGTATCTCAGTGA 888
Query 327 GAAAGAGATAGGTGACATTAAAGCGCTATTGGAATCAGCGACTGTTGATCCAAATGTAAA 386
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 889 TAAAGAGATAGGTGACATTAAAGCGCTATTGGAATCAGCAACTGTTGATCCAAATGTAAA 948
Query 387 AGGCGGTTTAAAGTGGCCGTTTGGTAAAGCTTTAACTAAAGATGGATACAGAGAATTTGA 446
||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 949 AGGCGGTTTAAGGTGGCCGTTTGGTAAAGCTTTATCTGAAGATGGATACAAAGAATTTGA 1008
Query 447 AGTTTGTCACGTTAGAGCTACTATCTACAAAAACAAAACTCTAAGGCTTAGGGTTAGAGA 506
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1009 AGTTTGTCACGTTAGAGCTACTATCTACAAAAATAAAACTCTAAGGCTTAGGGTAAGAGA 1068
Query 507 GACTGATAGATTCAATGAGAGGAGTGGAACAGGGGAAATCAAGAGGGAGGTGAGTCTGAC 566
|||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||
Sbjct 1069 GACTGATAGATTCAATGAGACGACTGGAACAGGGGAAACCAAGAGGGAGGTGAGTTTGAC 1128
Query 567 GCTTAAAGACATCGACACTAAGTTACAGGAACAGAACA-TGGTGAGGGCTTGTGTTGTGG 625
||||||||||||||||||||| ||||||| ||||||| || ||||| ||||||| |||
Sbjct 1129 GCTTAAAGACATCGACACTAAAATACAGGAGCAGAACACTGA-GAGGGGTTGTGTTTTGG 1187
Query 626 AAATGCTTCGAGATGCTCTTGGAACCATATGGGACTTCTTGCATTGCGATGCATATATTA 685
| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 1188 AGATGCTACGAGATGCTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1247
Query 686 C 686
|
Sbjct 1248 C 1248
Score = 161 bits (87), Expect = 7e-39
Identities = 154/184 (84%), Gaps = 13/184 (7%)
Strand=Plus/Plus
Query 1 ATGTCTTATATTCCTCCACATAAGCGACATTTG-A--ATCCGGCTAGA-CC-AGCCCCTG 55
|||||||||||||| ||||||||| | |||| | | ||||| | | | || | ||||||
Sbjct 71 ATGTCTTATATTCCACCACATAAGAGGCATTCGAAGGATCCGAC-AAAGCCTA-CCCCTG 128
Query 56 TTCCAGATTCTCTTATTCCCACATTCAAGAAAAACCTCGAATTCAAGAGTA--A--A--A 109
|||||||||||||| || | | ||||||||| ||||| || || ||||||| | | |
Sbjct 129 TTCCAGATTCTCTTGTTACAAAATTCAAGAAGAACCTTGACTTTAAGAGTAGCACTAGCA 188
Query 110 ATGATAAACGCAACAATATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTG 169
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GTGTTAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTG 248
Query 170 GTTC 173
||||
Sbjct 249 GTTC 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5