BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345626
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 872 0.0
> AT2G38430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54310.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:16092939-16095031 REVERSE LENGTH=1263
Length=1263
Score = 872 bits (472), Expect = 0.0
Identities = 585/637 (92%), Gaps = 18/637 (3%)
Strand=Plus/Plus
Query 1 ATGTCATATATTCCACCACATAAGAGGCATTCGAAGGATCCGGCAAAACCAACCCCTGTT 60
||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 71 ATGTCTTATATTCCACCACATAAGAGGCATTCGAAGGATCCGACAAAGCCTACCCCTGTT 130
Query 61 CCAGATTCTCTTGTTACAAAATTCAAGAAAAACGTCGACTTT-A-AG-AG---TAGCAGT 114
||||||||||||||||||||||||||||| ||| | |||||| | || || |||||||
Sbjct 131 CCAGATTCTCTTGTTACAAAATTCAAGAAGAACCTTGACTTTAAGAGTAGCACTAGCAGT 190
Query 115 GATAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTGGT 174
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GTTAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTGGT 250
Query 175 TCAAATGGAATCGAGGATGA-GTTTCCTTCGTTTGTTAAGCTTGTGCCCTTGTCCTCTGA 233
||||||||||| ||||| || ||| ||||||| ||||||| |||||||||||||||| ||
Sbjct 251 TCAAATGGAATTGAGGACGATGTT-CCTTCGTATGTTAAGTTTGTGCCCTTGTCCTCAGA 309
Query 234 TTCTGTCGAGTGCAGAAAAGGAGAAAAGCCTTCAATACTGATGAACAACAATGTCCAAAA 293
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TTCTGTCGAGTGTAGAAAAGGAGAAAAGCCTTCAATACTGATGAACAACAATGTCCAAAA 369
Query 294 TGATTTAGTGAATATGAATATTGGAGGGAGCATAG-ATGAGAGAACTCAGTGGCTATTAG 352
|| | | |||||||||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 370 TG-T---G--AATATGAATATTGGAGAGAGGA-AGGATGAGAGAACTCAGTGGCTATTAG 422
Query 353 TAGCTGAGAAGGTTGA-GGAGGATCTTTTGTTGGCATATGAGCGAGCTAAGACTGAAATG 411
|||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 423 TAGCTGAGAAGGTT-ATGGAGGATCTTGTGTTGGCATATGAGCGAGTTAAGACTGAAATG 481
Query 412 GGGGAGCATCATCATGTATTGAGATTGGTTGCTCGGTCTGGTAAAATTTTCTTCTACGGG 471
||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||
Sbjct 482 AAGGAGCATCATCATGTATCGAGACTGGTTGCTCGGTTTGGTAAAATTTTCTTCTATGGG 541
Query 472 AGTCAAGCTGGTCCTGTGGCTGAATGTTCACTAAATAACTTGAATAAGATGTTCTCTACG 531
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 AGTCAAGCTGGTCCTGTGGCTGAATGTTCACTAAAAAACTTGAATAAGATGTTCTCTACT 601
Query 532 GATGTCCCAATGTCTAACTTACAACACATCAAATCTAAGGTTGTACCAAGCCATGGATTC 591
||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 602 GATCTCCCAATGTCTTACTTACAACACATAAAATCTAATGTTGTACCAAGCCATGGATTC 661
Query 592 GCTATTGATCTGGAAAAGGAAACATACACTGTGAAGG 628
|||||||| ||| ||||||||||||||||||||||
Sbjct 662 TCTATTGATAAGGAGAAGGAAACATACACTGTGAAGG 698
Score = 590 bits (319), Expect = 1e-167
Identities = 419/467 (90%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 634 CTTAATCCTGTAAGGCATATGGTTGTTGATGTGTCATGCATCGATAAGAATCTTGACATG 693
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 785 CTTAATCCTGTAAGGCATTTGGTTGTTGATGTGTCATGCATTGATAAGAATCTCGACATG 844
Query 694 AGACTGATGCTCGCTGCCAAAAGGAAAATGACG-ACTCTTACAGAGAAAGAGACAAGCAA 752
||||| | |||| | || || ||| |||| ||| | ||| | || ||||||| | | |
Sbjct 845 AGACTAACGCTCACCGCTAAGAGGGAAATAACGTA-TCTCAGTGATAAAGAGATAGGTGA 903
Query 753 CATTAAAGCGCTATTGGATTCAGCAACTGTTGATCCGAACGTAAAAGGCGGTTTAAGGTG 812
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 904 CATTAAAGCGCTATTGGAATCAGCAACTGTTGATCCAAATGTAAAAGGCGGTTTAAGGTG 963
Query 813 GCCATTTGGTAAAGCTTCATCTGAGGATGGATACAGAGTATTTGAAGTTTGTCACGTTAG 872
||| ||||||||||||| |||||| |||||||||| || |||||||||||||||||||||
Sbjct 964 GCCGTTTGGTAAAGCTTTATCTGAAGATGGATACAAAGAATTTGAAGTTTGTCACGTTAG 1023
Query 873 AGCTACTATCTACAAAAATCAAACTCTAAGGCTTAGGGTAAGAGAGACTGATAGATTCAA 932
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 AGCTACTATCTACAAAAATAAAACTCTAAGGCTTAGGGTAAGAGAGACTGATAGATTCAA 1083
Query 933 TGAGAGGATTGGAACAGGGGAAATCAAGAGGGAGGTGACTCTGATACTTAAAGACCTA-A 991
||||| || |||||||||||||| |||||||||||||| | ||| ||||||||| | |
Sbjct 1084 TGAGACGACTGGAACAGGGGAAACCAAGAGGGAGGTGAGTTTGACGCTTAAAGACATCGA 1143
Query 992 -ACTATAAGTTACAGGAGCAGAACGCTGAGAGGGGT-GATGTTTTGGAGATGCTACGAGA 1049
|||| || | ||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 1144 CACTAAAA-T-ACAGGAGCAGAACACTGAGAGGGGTTG-TGTTTTGGAGATGCTACGAGA 1200
Query 1050 TACTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1096
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGCTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5