BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345628
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like... 643 0.0
> AT2G38450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sel1-like
(InterPro:IPR006597); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits
to 88 proteins in 25 species: Archae - 0; Bacteria - 16;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr2:16101975-16102916 FORWARD
LENGTH=691
Length=691
Score = 643 bits (348), Expect = 0.0
Identities = 394/415 (95%), Gaps = 7/415 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAAATCGATTCCCGTCAAAACAGGGCTAAGAGGAGCTTCCGCAGCAGTAGCTGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 ATGGGAAAATCGATTCCCGTCAAAACAGGGCTAAGAGGAGCTTCCGCAGCAGTAGCTGGA 101
Query 61 TTCATCAAATCCTCAAAACCGATCCGACCCATTTCTTCCTCCATGGACAGTCCCGACAAA 120
||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 102 TTCATCAAATCCTCAAAACCGATCCGACCCATTTC--C-TCCATGGACAGTTCCGACAAA 158
Query 121 GATTCATCAGccaccaccaccaccaccGGAACTAGC-CGCCGCTTT-GTTCCTCTTTCCT 178
||||||||| ||||||||||||||| || ||||| | || || ||| ||||| ||||| |
Sbjct 159 GATTCATCATCCACCACCACCACCAGCGAAACTA-CACGACG-TTTCGTTCCGCTTTCAT 216
Query 179 CGGTGGTTTCTGATTGTGCGAAGCGGTGGTTCAAAGACACTCTTGAGGAAGCTAAAGCTG 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 217 CGGTGGTTTCTGATTGTGCGAAGCGGTGGTTTAAAGACACTCTTGAGGAAGCTAAAGCTG 276
Query 239 GGAACATCACTATGCAGGTTTTGTTAGGTCAGATGTATTATTCTGGTTATGGAGTCCCTA 298
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 277 GGAACATCACTATGCAGGTTTTGTTAGGTCAGATGTATTACTCTGGGTATGGAGTCCCTA 336
Query 299 AGGATGCTAAAAAGGGGAGACTTTGGATTACGAAAGCATCAAGAGTTCGATCTTCAGTAT 358
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 337 AGGATGCTAGAAAGGGGAGACTTTGGATTACGAAAGCATCAAGAGTTCGTTCTTCAGTGT 396
Query 359 GGAAAGTGAAAGATAAACGACCAGGTTACAACGCAAGTGATTCAGATTCAGAGTC 413
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GGAAAGTGATAGATAAACGACCAGGTTACAACGCAAGTGATTCAGATTCAGAGTC 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5