BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345632
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1027 0.0
AT3G51650.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1005 0.0
> AT3G51640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G51650.1);
Has 26208 Blast hits to 14155 proteins in 1229 species: Archae
- 43; Bacteria - 3230; Metazoa - 9456; Fungi - 2551; Plants
- 1160; Viruses - 177; Other Eukaryotes - 9591 (source:
NCBI BLink). | chr3:19153762-19157321 FORWARD LENGTH=3108
Length=3108
Score = 1027 bits (556), Expect = 0.0
Identities = 928/1103 (84%), Gaps = 43/1103 (4%)
Strand=Plus/Plus
Query 7 CCTTGGTTGGTCTTACCTTTGATTGGACTTTGGGCTCTGTCTCAGCTTCTTCCACCAGCT 66
|||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 447 CCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCACCAGCT 506
Query 67 TTTCGTTTTGAAATAACATCTCCGAGGCTAGCTTGTGTATTTGTGCTTTTGGTTACTTTG 126
||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 507 TTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTTACTTTG 566
Query 127 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGTGTGCGGAGAAATGCT-AG 185
||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 567 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAATGCCCA- 625
Query 186 ACTTAGGGAGAGA-AAGAGATTGGAAGCTATGGAACTGCAAAAGCTT-AAGAAAACTGCT 243
||||||||||||| || ||||| |||||||| ||| |||||||| || ||||||| |||
Sbjct 626 ACTTAGGGAGAGAGAA-AGATTAGAAGCTATTGAATTGCAAAAG-TTGAAGAAAAATGCC 683
Query 244 ACACGACGTTGCCGTAACTGCTCAACGCCTTACCGGGACCAAAATCCTGGTGGTGGAAAA 303
||| | ||||| || |||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 684 ACAAGGCGTTGTCGGAACTGCTCAAATCCTTACAGGGACCAAAATCCTGGTGGTGGCAAA 743
Query 304 TTTATGTGCTCATATTGTGGGCATATATC-AAA-GAGACCTGTTTTAGACATG-CCT-GT 359
|||||||| || |||||||| ||| |||| ||| | | ||||||||||||||| ||| ||
Sbjct 744 TTTATGTGTTCGTATTGTGGACATGTATCTAAACG-G-CCTGTTTTAGACATGGCCTTGT 801
Query 360 TCCCCCAGGGTTAG-GACTTTCTGGTTCTGGAATATTGAAGGATCTTGTAGGAAGAGGTG 418
| || || |||| || |||||||||| || || |||||||||||||| ||||||||||
Sbjct 802 -CTTCC-GGATTAGAGA-TTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTG 858
Query 419 GTAAGATTTTGAATGGAAAGGGATGGAATGAGAATGGTTGGATGCACGGGCAAGAATGGT 478
| ||||| |||||||| |||||||||| ||||||||| | ||||| ||||||| ||||
Sbjct 859 GAAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGT 918
Query 479 CAGAAAACAGCACATGGACTAGCGAGTCA-GCCTATTGGCGGAATCATAGTGGT-AGTAC 536
| || ||||||||||||||||||| |||| || |||||||||||| ||||||| | |||
Sbjct 919 CTGACAACAGCACATGGACTAGCGGGTCAAGC-TATTGGCGGAATAATAGTGGCGA-TAC 976
Query 537 ATTTGGTGAAGATGAGAATTGCTTGGGGGAAAAATCATATCCTGGTGGCGTTGTTTTTGC 596
|||| | |||||| ||||| |||| ||| ||||||||| ||||||| |||||||||||
Sbjct 977 GTTTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGC 1036
Query 597 TTGCCGGCTGCTTG-CTTCTTTTTTCATGAGCATTAGGTGGCTTTGGAGAAAGATTTTTA 655
|||| || |||| | |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1037 TTGCAGGTTGCT-GACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTA 1095
Query 656 GCTTTAGCTCTTCGGTTGATGAATCGTCAACC-GATGCTGACCAGAGACG-AT-TACTGG 712
| |||||||| || |||| ||| || ||| | || |||| ||||| || || | |||
Sbjct 1096 GATTTAGCTCATCAGTTGGTGATTCATCA-CTTGACCCTGAGCAGAGGCGGATGT--TGG 1152
Query 713 CTAGGCAGGGTGAGAATGGGACCAGCTATCATGAGAGTAGGGTTGAGAAAG-CACGCAGA 771
|||||||||||||||| ||||| |||| |||||| |||||||| || |||| |||| |||
Sbjct 1153 CTAGGCAGGGTGAGAACGGGACAAGCTGTCATGAAAGTAGGGTAGA-AAAGGCACGTAGA 1211
Query 772 AAAGCCGAGGAGAAAAGACAAGCTAGGCTGGAAAAGGAGCATTTGGAGGAAGAAGAGAGA 831
||||| ||||||||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 1212 AAAGCAGAGGAGAAAAGACAAGCTAGGCTAGAGAAGGAGCATTCAGAGGAGGAAGAGAGA 1271
Query 832 AAACAACGAGAGGAAGTCGCGAA-ACTAGTGGAGGAACGGAGAAAATTAAGAGATGAGA- 889
|||||| |||||||||| || || |||||| ||||||||||||| | ||||||||||
Sbjct 1272 AAACAAAGAGAGGAAGTAGC-AAGACTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGAT 1330
Query 890 AGATTGAAGCCGAGAGATGCAGCAAAGCATCATCTG-CTTCCaaagaaaaagatactaaa 948
| |||| ||||||| |||||||||| |||| || || | || || || || |||||
Sbjct 1331 AC-TTGAGGCCGAGAAATGCAGCAAATTATCAG-TGGCTGCTAAGGAGAAGGACACTAA- 1387
Query 949 aggggggcagagaagaagagccaggagagaaagaaa-gaaagagatagagCCTCTAGTAA 1007
|| || |||| |||||| | |||||||||| |||| || |||||||| ||||| |||||
Sbjct 1388 -GGAGG-CAGAAAAGAAGCGTCAGGAGAGAA-GAAAAGAGAGAGATAGGGCCTCAAGTAA 1444
Query 1008 GAGCAATTCCGATG-TCGAAGAGCTTGATAAGAGAATAGGAAAAGATACTGACCATAAGC 1066
||||||||| |||| | |||||| |||| ||||||| | |||| || || || || ||||
Sbjct 1445 GAGCAATTCTGATGGT-GAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAGC 1503
Query 1067 GTGAGCTTGAGAAAAATGATCAT 1089
||| |||| | || | |||||||
Sbjct 1504 GTGGGCTTTATAAGAGTGATCAT 1526
Score = 255 bits (138), Expect = 1e-66
Identities = 212/248 (85%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 1728 TGAAGAAGAGCGTTTTGAAGATCCGTGTTATGTTCCGGATCCAATATCTCTTCTGGGACC 1787
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 2168 TGAAGATGAGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACC 2227
Query 1788 TGTTTCAGAATCGCTTGATCTAAG-G--GCTGGGTTTGAAACTGGTGGAAGACTGAAAAA 1844
|||||||||||| |||||| |||| | ||||||| ||||||||| | ||| | |||
Sbjct 2228 TGTTTCAGAATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAA 2287
Query 1845 ACCCCACTTGTTAAAGAATACACCTTTTTGTGAAGTCAATAAGCCATCTCCGATAGAATC 1904
| ||| | | ||||||||||||| |||||||| ||| ||||||||||| || || ||
Sbjct 2288 ATACCAGGCGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGTC 2347
Query 1905 TCCCTTGTCAAGATTACGAGTTGCAGATGAAAAACAAGTTAATGATGGAAGCTGGCAAAT 1964
||||||||| |||| ||| | ||| ||||||||||||| |||||||||||||||||||||
Sbjct 2348 TCCCTTGTCTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAAT 2407
Query 1965 GTGGAAGA 1972
||||||||
Sbjct 2408 GTGGAAGA 2415
> AT3G51650.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G51640.1);
Has 27645 Blast hits to 15097 proteins in 1246 species: Archae
- 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants
- 1205; Viruses - 196; Other Eukaryotes - 10107 (source:
NCBI BLink). | chr3:19158971-19162379 FORWARD LENGTH=2979
Length=2979
Score = 1005 bits (544), Expect = 0.0
Identities = 915/1089 (84%), Gaps = 45/1089 (4%)
Strand=Plus/Plus
Query 7 CCTTGGTTGGTCTTACCTTTGATTGGACTTTGGGCTCTGTCTCAGCTTCTTCCACCAGCT 66
|||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 393 CCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCACCAGCT 452
Query 67 TTTCGTTTTGAAATAACATCTCCGAGGCTAGCTTGTGTATTTGTGCTTTTGGTTACTTTG 126
||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 453 TTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTTACTTTG 512
Query 127 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGTGTGCGGAGAAATGCT-AG 185
||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 513 TTCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAATGCCCA- 571
Query 186 ACTTAGGGAGAGA-AAGAGATTGGAAGCTATGGAACTGCAAAAGCTT-AAGAAAACTGCT 243
||||||||||||| || ||||| |||||||| ||| |||||||| || ||||||| |||
Sbjct 572 ACTTAGGGAGAGAGAA-AGATTAGAAGCTATTGAATTGCAAAAG-TTGAAGAAAAATGCC 629
Query 244 ACACGACGTTGCCGTAACTGCTCAACGCCTTACCGGGACCAAAATCCTGGTGGTGGAAAA 303
||| | ||||| ||||||||||||| |||||| ||||||||||||| |||||||| |||
Sbjct 630 ACAAGGCGTTGTCGTAACTGCTCAAATCCTTACAGGGACCAAAATCCAGGTGGTGGGAAA 689
Query 304 TTTATGTGCTCATATTGTGGGCATATATCAAAGA-GACCTGTTTTAGACATG-CCT-GTT 360
|||||||| || |||||||| ||| ||||||| | | ||||||||||||||| ||| ||
Sbjct 690 TTTATGTGTTCGTATTGTGGACATGTATCAAA-ACGGCCTGTTTTAGACATGGCCTTGT- 747
Query 361 CCCCCAGGGTTAG-GACTTTCTGGTTCTGGAATATTGAAGGATCTTGTAGGAAGAGGTGG 419
| || || |||| || |||||||||| || || |||||||||||||| |||||||||||
Sbjct 748 CTTCC-GGATTAGAGA-TTTCTGGTTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTGG 805
Query 420 TAAGATTTTGAATGGAAAGGGATGGAATGAGAATGGTTGGATGCACGGGCAAGAATGGTC 479
||||| |||||||| |||||||||| ||||||||| | ||||| ||||||| |||||
Sbjct 806 AAAGATGTTGAATGGGAAGGGATGGAGTGAGAATGGATATTTGCACAGGCAAGAGTGGTC 865
Query 480 AGAAAACAGCACATGGACTAGCGAGTCA-GCCTATTGGCGGAATCATAGTGGT-AGTACA 537
|| ||||||||||||||||||| |||| || |||||||||||| ||||||| | |||
Sbjct 866 TGACAACAGCACATGGACTAGCGGGTCAAGC-TATTGGCGGAATAATAGTGGCGA-TACG 923
Query 538 TTTGGTGAAGATGAGAATTGCTTGGGGGAAAAATCATATCCTGGTGGCGTTGTTTTTGCT 597
|||| | |||||| ||||| |||| ||| ||||||||| ||||||| ||||||||||||
Sbjct 924 TTTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATATTCTGGTGGTGTTGTTTTTGCT 983
Query 598 TGCCGGCTGCTTG-CTTCTTTTTTCATGAGCATTAGGTGGCTTTGGAGAAAGATTTTTAG 656
||| || || ||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 984 TGCAGGTTG-TTGACTTCTTTTTTCATGAGCATTTTGTGGCTTTGGAGAAAGATATTTAG 1042
Query 657 CTTTAGCTCTTCGGTTGATGAATCGTCAACC-GATGCTGACCAGAGACG-AT-TACTGGC 713
|||||||| || |||| ||| || ||| | || |||| ||||| || || | ||||
Sbjct 1043 ATTTAGCTCATCAGTTGGTGATTCATCA-CTTGACCCTGAGCAGAGGCGGATGT--TGGC 1099
Query 714 TAGGCAGGGTGAGAATGGGACCAGCTA-TCATGAGAGTAGGGTTGAGAAAG-CACGCAGA 771
||||||||||||||| ||||| ||| | |||||| |||||||| || |||| |||| |||
Sbjct 1100 TAGGCAGGGTGAGAACGGGACAAGC-AGTCATGAAAGTAGGGTAGA-AAAGGCACGTAGA 1157
Query 772 AAAGCCGAGGAGAAAAGACAAGCTAGGCTGGAAAAGGAGCATTTGGAGGAAGAAGAGAGA 831
||||| ||||||||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 1158 AAAGCAGAGGAGAAAAGACAAGCTAGGCTAGAGAAGGAGCATTCAGAGGAGGAAGAGAGA 1217
Query 832 AAACAACGAGAGGAAGTCGCGAA-ACTAGTGGAGGAACGGAGAAAATTAAGAGATGAGA- 889
|||||| |||||||||| || || | |||| ||||||||||||| | ||||||||||
Sbjct 1218 AAACAAAGAGAGGAAGTAGC-AAGATTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGAT 1276
Query 890 AGATTGAAGCCGAGAGATGCAGCAAAGCATCATCTG-CTTCCaaagaaaaagatactaaa 948
| |||| ||||||| |||||||||| ||| || || | || || ||||| |||||
Sbjct 1277 AC-TTGAGGCCGAGAAATGCAGCAAATTTTCAG-TGGCTGCTAAGGAGAAAGACACTAA- 1333
Query 949 aggggggcagagaagaaga-gccaggagagaaagaaa-gaaagagatagagCCTCTAGTA 1006
|| || |||| ||||| | | |||||||||| |||| || |||||||| ||||| ||||
Sbjct 1334 -GGAGG-CAGAAAAGAA-ACGTCAGGAGAGAA-GAAAAGAGAGAGATAGGGCCTCAAGTA 1389
Query 1007 AGAGCAATTCCGATG-TCGAAGAGCTTGATAAGAGAATAGGAAAAGATACTGACCATAAG 1065
|||||||||| |||| | |||||| |||| ||||||| | |||| || || || || |||
Sbjct 1390 AGAGCAATTCTGATGGT-GAAGAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAG 1448
Query 1066 CGTGAGCTT 1074
|| | ||||
Sbjct 1449 CGCGGGCTT 1457
Score = 255 bits (138), Expect = 1e-66
Identities = 213/249 (86%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 1728 TGAAGAAGAGCGTTTTGAAGATCCGTGTTATGTTCCGGATCCAATATCTCTTCTGGGACC 1787
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 2114 TGAAGATGAGCGTTTTGAAGATCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACC 2173
Query 1788 TGTTTCAGAATCGCTTGATCTAAG-G--GCTGGGTTTGAAACTGGTGGAAGACTGAAAAA 1844
|||||||||||| |||||| |||| | ||||||| ||||||||| | ||| | |||
Sbjct 2174 TGTTTCAGAATCACTTGATTTAAGAGCTGCTGGGTATGAAACTGGCATAGGACAGGTAAA 2233
Query 1845 ACCCCACT-TGTTAAAGAATACACCTTTTTGTGAAGTCAATAAGCCATCTCCGATAGAAT 1903
| ||| | | | ||||||||||||| |||||||| ||| ||||||||||| || || |
Sbjct 2234 ATACCA-TGCGATGAAGAATACACCTTCTTGTGAAGCCAACAAGCCATCTCCAATTGAGT 2292
Query 1904 CTCCCTTGTCAAGATTACGAGTTGCAGATGAAAAACAAGTTAATGATGGAAGCTGGCAAA 1963
|||||||||| |||| ||| | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 2293 CTCCCTTGTCTAGATCACGGGCTGCGGATGAAAAACAAGCTAATGATGGAAGCTGGCAAA 2352
Query 1964 TGTGGAAGA 1972
|||||||||
Sbjct 2353 TGTGGAAGA 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120682110180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5