BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345641
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38580.1 | Symbols: | Mitochondrial ATP synthase D chain-re... 1690 0.0
> AT2G38580.1 | Symbols: | Mitochondrial ATP synthase D chain-related
protein | chr2:16138570-16142588 FORWARD LENGTH=1774
Length=1774
Score = 1690 bits (915), Expect = 0.0
Identities = 1148/1256 (91%), Gaps = 34/1256 (3%)
Strand=Plus/Plus
Query 301 GAAGATGATTCTGGTGTTGAGAACAAGTCTCAGGGAAGTGAGGTGCTGTTGGAAGAAACA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GAAGATGATTCTGGTGTTGAGAACAAGTCTCAGGGAAGTGAGGTGCTGTTGGAAGAAACA 369
Query 361 ATCAAACAGTTACGTGAGGAAAATGGTTCCTACCTTCAGAAAGAGGCAT--TTTTAGAAG 418
|| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 370 ATTAAACAGTTACGTGAGGAAAATGGTTCCTACCTTCAGAAAGAGGC-TGGTTTT-GAAG 427
Query 419 AAAG-GCTT-GT-GCATTTGAAAACAGAGAATGAAGCTCACATACA-AAATGAGGCACTG 474
||| | || | || || |||| | ||||||||||||||||| || ||| |||||| ||
Sbjct 428 AAAATG-TTAGACGC-TTGGAAACC-GAGAATGAAGCTCACATTCAGAAA-GAGGCATTG 483
Query 475 TTGGAAGAAAAGCTCT-TGCATTTGAGAACAGAGAATGAAGCTCACACACAAAATGAGGC 533
|| ||||||| ||| | | ||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 484 TTAGAAGAAAGGCT-TGTACATTTGAAAACAGAGAATGAAGCTCACGTACATAATGAGGC 542
Query 534 ATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATGAAGCTCACATACAAAATGA 593
| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 543 ACTGTTAGAAGGAAAGCTCTTGCATTTGAGAACAGAGAATGAAGATCACATACAGAATGA 602
Query 594 GGCACGGTTGGAAGAAAGGCTCTTACATTTGAGAACTGAAAATGAAGCTCACAAACAAAA 653
||||| ||| ||||||| |||||| ||||||||||| || ||||||||||||| ||||||
Sbjct 603 GGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACATACAAAA 662
Query 654 CGAAG-A-TCATCTA-GAA-G--T-TGG-AGGTCAAAA-T-AACATTGTATTT-ATG--C 700
|| | | | | | ||| | | | | | | || | || || | | | | |
Sbjct 663 TGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAAT-GAAGCTCACAAAC 721
Query 701 AG---GAA-AA--GTTGGAGGAAAGACTTGTGCAGTATAAAAACAAGAACGACATGCTTC 754
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AAAACGAAGAAAAGTTGGAGGAAAGACTTGTGCAGTATAAAAACAAGAACGACATGCTTC 781
Query 755 TTCGCGAAATGTCTAGTACAGAAGCCCAGATGAGACAATTGCTAGATGAAAGATCTACCT 814
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TTCGTGAAATGTCTAGCACAGAAGCCCAGATGAGACAATTGCTAGATGAAAGATCTACCT 841
Query 815 TTACTCAGAAAGAGGCGAGTCTAGAAAAGAAAGTTCAACAACATCAACATGATGAAGAAT 874
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 842 TCACTCAGAAAGAGGCGAGTCTAGAAAAGAAAGTTCAACAACTTCAACACGATGAAGAAT 901
Query 875 CCTTCGTGGCTGAGGAGAAGTCATCCAGAGAAATGATATCTAGCCTGAACAATGAAATTG 934
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 CCTTGGTGGCTGAGGAGAAGTCATCCAGAGAAATGATATCTAGCCTTAACAATGAAATTG 961
Query 935 CAAGGCTACGAGCACAGGTTACGGAGTTGGAAGAATCTAAGAGTAATCTTCTAGAGCAGA 994
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 962 CAAGGCTGCGAGCACAGGTTACGGAGTTGGAAAAATCTAAGAGTAATCTTCTAGAGCAGA 1021
Query 995 ATCAGAGTCTTAAGGAAACTGTATCCAGTCTTCAAGTCCAGCATGAAAACCATGATAGTA 1054
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1022 ATCAGAGTCTTAAGGAAACTATATCCAATCTTCAAGTCCAGCATGAAAACCATGATAGTA 1081
Query 1055 ACGCAAAGGGTGCTTCTGAGGAAGAATTAAACTCTCAGATTGAAGCAGCTTGTACTCTAG 1114
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1082 ACGCAAAGGGTGCTTCTGAGGAAGAATTAAACTCACAGATTGAAGCAGCTTGTACTCTAG 1141
Query 1115 TGGAAAAGCTTATCACTGAAAATGCTGAACTTGTTGAAAAGGTGAACGAGCTGTGTATTA 1174
| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1142 TTGAAAAGCTTATCACTGAAAATGCTGATCTAGTTGAAAAGGTGAACGAATTGTGTATTA 1201
Query 1175 AGCTAAACCAGTCGCAGCATGCTTCCCCTGAGAGCCTAGCAATTGAAGTAGAGAAGTCTG 1234
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1202 AGCTAAACCAATCACAGCATGCTTCCCCTGAGAGCCTAGCAATTGAAGTAGAGAAATCTG 1261
Query 1235 AATCCTTAGAAGAAATACCCATACACGACGAGTTGATTAGAATTGATAACTCTAAGGACA 1294
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1262 AATCCTTAGAAGAAATACCCATACACGACGAGTTGATTAGAATTGATAACTCTAGGGACA 1321
Query 1295 TGGATACTGCATTGATAAAGAGAAACTTGTCAGAAGGCGAAATAGAAGAAACGGTGCCGC 1354
|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1322 TGGATACTGCATCAATAAAGAGAAACTTTTCAGAAGGTGAAATAGAAGAAACGGTGCCGC 1381
Query 1355 TCTCTCTGAACGCGAATGGGGAAGTAGACGTGGAATCACAGGTTGTAGTAGCTGGAGAAG 1414
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1382 TCTCTCTGAACGCGAATGGGGAAGTAGACGTGGAATCACAGGTTGCAGTAGCTGGAGAAG 1441
Query 1415 ACGAAGTAATTGCTGGTGTGCCTCTGGCGGACGCTCCACTTATCGGTGCTCCCTTCAGGC 1474
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1442 ACGAAATAAATGCTGGTGTGCCTCTGGCGGACGCTCCACTTATCGGTGCTCCATTCAGGC 1501
Query 1475 TCGTCTCGTTTGTAGCAAGATACGTGAGTGGTGCAGATTTGGCGGCAAAGAAATAG 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TCGTCTCGTTTGTAGCAAGATACGTGAGTGGTGCAGATTTGGCGGCAAAGAAATAG 1557
Score = 418 bits (226), Expect = 8e-116
Identities = 252/265 (95%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 395 TTCAGAAAGAGGCATTTTTAGAAGAAAGGCTTGTGCATTTGAAAACAGAGAATGAAGCTC 454
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 467 TTCAGAAAGAGGCATTGTTAGAAGAAAGGCTTGTACATTTGAAAACAGAGAATGAAGCTC 526
Query 455 ACATACAAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAG 514
|| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 527 ACGTACATAATGAGGCACTGTTAGAAGGAAAGCTCTTGCATTTGAGAACAGAGAATGAAG 586
Query 515 CTCACACACAAAATGAGGCATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATG 574
||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 587 ATCACATACAGAATGAGGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATG 646
Query 575 AAGCTCACATACAAAATGAGGCACGGTTGGAAGAAAGGCTCTTACATTTGAGAACTGAAA 634
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 647 AAGCTCACATACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAA 706
Query 635 ATGAAGCTCACAAACAAAACGAAGA 659
|||||||||||||||||||||||||
Sbjct 707 ATGAAGCTCACAAACAAAACGAAGA 731
Score = 316 bits (171), Expect = 3e-85
Identities = 192/202 (95%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 1 ATGgaagacgacaagaagaagaagagaaacaagaaaaagaagaaTAAGCTGAATAATAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 109 ATGGAAGACGACAAGAAGAAGAAGAGAAACAAGAAAAAGAAGAATAAGCAGAATAATAAA 168
Query 61 CGTGTTGACGACGCTATAGCTTCCGGTGCAACGACCTTCG-CTGATGAAAATCATATCGG 119
||||||||||||||| ||||||| ||||||||||||| || | |||||||||||||||||
Sbjct 169 CGTGTTGACGACGCTTTAGCTTCTGGTGCAACGACCTCCGTC-GATGAAAATCATATCGG 227
Query 120 AGATGGTGACGTTCCTCAAATTAGCGAACGTCCAGATGTCGATGAGTCGCAATCATCTCA 179
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 228 AGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGATGCCGATGAGTCGCAATCATCTCA 287
Query 180 TCAGATCAATGTCGTCGCAACT 201
||||||| ||||||||||||||
Sbjct 288 TCAGATCGATGTCGTCGCAACT 309
Score = 254 bits (137), Expect = 2e-66
Identities = 187/211 (89%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 403 GAGGCATTTTTAGAA-GAAAGGCT-TGTGCATTTGAAAACAGAGAATGAAGCTCACATAC 460
|||||| | |||||| |||| ||| | ||||||||| |||||||||||||| ||||||||
Sbjct 538 GAGGCACTGTTAGAAGGAAA-GCTCT-TGCATTTGAGAACAGAGAATGAAGATCACATAC 595
Query 461 AAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACA 520
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGAATGAGGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACA 655
Query 521 CACAAAATGAGGCATTGTTAGAAGAAAAGCTCTTACATTTGAGAACAGAGAATGAAGCTC 580
||||||||||||| |||| ||||||| |||||||||||| ||||| || ||||||||||
Sbjct 656 TACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAATGAAGCTC 715
Query 581 ACATACAAAATGAGGCACGGTTGGAAGAAAG 611
||| |||||| || | | |||||| |||||
Sbjct 716 ACAAACAAAACGAAGAAAAGTTGGAGGAAAG 746
Score = 171 bits (92), Expect = 3e-41
Identities = 119/132 (90%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 397 CAGAAAGAGGCATTTTTAGAAGAAAGGCT-TGTGCATTTGAAAACAGAGAATGAAGCTCA 455
||||| |||||| | |||||||||| ||| | ||||||||| ||||||||||||||||||
Sbjct 595 CAGAATGAGGCACTGTTAGAAGAAAAGCTCT-TGCATTTGAGAACAGAGAATGAAGCTCA 653
Query 456 CATACAAAATGAGGCACTGTTGGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGC 515
||||||||||||||||||||||||||||| |||||| ||||| ||||| || ||||||||
Sbjct 654 CATACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAATGAAGC 713
Query 516 TCACACACAAAA 527
||||| ||||||
Sbjct 714 TCACAAACAAAA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5