BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345659
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38760.1 | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16200994... 1402 0.0
> AT2G38760.1 | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16200994-16202669
FORWARD LENGTH=1237
Length=1237
Score = 1402 bits (759), Expect = 0.0
Identities = 913/985 (93%), Gaps = 20/985 (2%)
Strand=Plus/Plus
Query 1 ATGGCCACCATTAGAGTACCAAACGAAGTTCCTTCTCCAGCTCAGGATTCTGAAACTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATGGCCACCATTAGAGTACCAAACGAAGTTCCTTCTCCAGCTCAGGATTCTGAAACTCTC 152
Query 61 AATCAAGCTTTTCGTGGATGGGGAACAGATGAGAAAGCGATTATACGAGTTTTAGGACAA 120
|| |||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 153 AAACAAGCTATTCGCGGATGGGGAACAGATGAGAAGGCGATTATACGAGTTTTAGGGCAA 212
Query 121 AGAGATGAGAGCCAAAGAAGG-AGAATCAGAGAAACTTACAAAGAGATTTACGGCAAAGA 179
||||| ||||||| |||||| || || ||||||| || | ||||||||| ||||||||
Sbjct 213 AGAGACCAGAGCCAGAGAAGGAAG-ATTAGAGAAAGTTTTAGAGAGATTTATGGCAAAGA 271
Query 180 TCTTATCCATGATCTCTCCTCTGAATTGTCTGGTGATTTCATGAAAGCTGTGGTTTCGTG 239
||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 272 TCTTATCGATGTTCTATCCTCCGAACTGTCTGGTGATTTCATGAAAGCTGTGGTTTCGTG 331
Query 240 GACGTATGATCCAGCTGAGAGAGACGCAAGGCTTGTGAACAAGATTTTGAAGGATAAGAA 299
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 332 GACGTATGATCCAGCAGAGAGAGACGCAAGGCTTGTGAACAAGATTTTGAACAAGGAGAA 391
Query 300 GAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACAACTTCTCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 392 GAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACGACTTCCCC 451
Query 360 AAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCTCTCTTTGACTCATCACTTGAAGA 419
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 452 AAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTTGAAGA 511
Query 420 AGACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGTTTCTGGTGACATTGGCAAGTTC 479
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 512 ACACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGTTACTGGTGACATTGGCAAGTAC 571
Query 480 ATTCAGATATGAAAAAGACAAGACTGATGCAGAAGTAGCTACTATTGAGGCGGCTATGCT 539
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 572 ATTCAGATATGACAAAGATAGGACTGATGCAGAAGTAGCTACTATTGAGGCGGCTATGCT 631
Query 540 ACGTGAAGCCATAGAGAAGAAACAATTAGATCATGATCATGTCCTGTACATATTAGGAAC 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 632 ACGTGAAGCCATAGAGAAGAAACAATTAGATCATGACCATGTCCTGTACATATTAGGAAC 691
Query 600 GCGTAGTATCTACCAGCTCAGAGAAACTTTTGTCGCTTACAAGAAGAACTATGAGGTCAC 659
|||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 692 GCGTAGTATCTATCAGCTCAGAGAAACTTTTGTTGCTTACAAGAAGAATTATGGGGTCAC 751
Query 660 AATTGATGAGGTTCAGATTCATGGTTTGGATGTTGATGGATGTCCAGGAGATGCTGATCT 719
||||||| | || | |||||||||||||||||||||||||||||||
Sbjct 752 AATTGAT-A-----AG------G------ATGTTGATGGATGTCCAGGAGATGCTGATCT 793
Query 720 GAGGAGTCTATTGCAGATGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAA 779
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GAGAAGTCTATTGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAA 853
Query 780 GGTTGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGAGCGAT 839
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 854 GGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGAT 913
Query 840 TGTGGCGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAGAGTATTTCAACATGTACAA 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 914 TGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAGAGTATTTCAACATGTATAA 973
Query 900 TACAAGCATGGATAACGCTATCACCGGTGATATTTCTGGAGACTACAAGGACTTCATTAT 959
|||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 974 TACAAGCATGGACAATGCTATTACTGGTGATATTTCTGGAGACTACAAGGACTTCATTAT 1033
Query 960 CACTTTACTTGGATCCAAAATCTGA 984
||| |||||||||||||||||||||
Sbjct 1034 CACCTTACTTGGATCCAAAATCTGA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5