BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345677
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 401 5e-111
AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, ... 342 3e-93
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 401 bits (217), Expect = 5e-111
Identities = 346/408 (85%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 427 CTTGCTGCGGCTTACCTTCCCCCTGAC-TCATCCGCAAGAGTAAAGGCTACAGCA-AGGT 484
|||| |||||||||| || ||||| | ||||| ||||||||||||||||||| | ||||
Sbjct 1244 CTTGTTGCGGCTTACATT--CCCTG-CATCATCTGCAAGAGTAAAGGCTACAG-AGAGGT 1299
Query 485 TTGAGGCAATTTATCCCTTGTTGAAGGAATTGGCTCTTGCCGGTACACCAGGAGGCGAGG 544
|||||||||| ||||||||| |||| ||| |||||||||| ||| |||||||| || |||
Sbjct 1300 TTGAGGCAATATATCCCTTGCTGAAAGAAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGG 1359
Query 545 CTATGAAAAAAGGCGCTCGACAGATATTTATTTTTTCTTTGAGATTAGCTGGGGGAGCAA 604
| |||||| ||| | | | ||||||||| | |||| || ||| ||||||||| | || ||
Sbjct 1360 CGATGAAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAA 1419
Query 605 ATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAACATAG 664
|||||||||||||||||||||||||| |||| ||||||||| || ||||| ||||| | |
Sbjct 1420 ATCCTGTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGACCCAAAACTTTG 1479
Query 665 TTTGCTGCAATCACTGGGACAATCTCTACGAGAATAATCTAAAAGCTAGTGTTGCTCTTC 724
||||||||| |||||||||||||||||| || | ||||| |||||||||||||| |||
Sbjct 1480 ATTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTC 1539
Query 725 TTAAAAATCTTGTAGACGAATGGAAGGATCATTCTCG-CAAACTATCATCATCACGGAGT 783
||||||| ||||| || |||||||| || ||||| | ||||||||||||||||| || |
Sbjct 1540 TTAAAAAGCTTGTTGAAGAATGGAAAGAGCATTCG-GTCAAACTATCATCATCACCGAAT 1598
Query 784 AATACTCTCACTCTCAATCAAACTATGAAGAGCTTCAGGCTAAAAGAA 831
|| ||||||||||||| | ||||||||| |||||||||||||| |||
Sbjct 1599 GATGCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAA-GAA 1645
> AT3G11880.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707
Length=1707
Score = 342 bits (185), Expect = 3e-93
Identities = 342/414 (83%), Gaps = 26/414 (6%)
Strand=Plus/Plus
Query 427 CTTGCTGCGGCTTACCTTCCCCCTGAC-TCATCCGCAAGAGTAAAGGCTACAGCA-AGGT 484
|||| |||||||||| || ||||| | ||||| | ||||||||||||||||| | ||||
Sbjct 796 CTTGATGCGGCTTACATT--CCCTG-CTTCATCTGAAAGAGTAAAGGCTACAG-AGAGGT 851
Query 485 TTGAGGCAATTTATCCCTTGTTGAAGGAATTGGCTCTTGCCGGT-ACACCAGGAGGCGAG 543
||||||||||||||||||||||||||||| ||||||||||| || | ||||||| |||||
Sbjct 852 TTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGA-ACCAGGAAGCGAG 910
Query 544 GCTA-TGAAAAAAGGCGCTCGACAGATATTT-ATTTTTTCTTTGAGATTAGCTGGGGGA- 600
|| ||||| ||| | ||| ||| ||||| ||| || |||||| | ||||||| ||
Sbjct 911 T-TAATGAAACAAGTCACTCAACAAATATTCCATTATT-CTTTGATAATAGCTGGAAGAA 968
Query 601 GCAAATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAAC 660
| ||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 969 G-AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAAC 1027
Query 661 ATAGTTTGCTGCAATCACTGGGACAATCTCTAC-GAGAATAATCTAA-AAGCTAGTGTTG 718
||| ||||||||| || ||||| || ||||| | || ||| || ||||||||||||
Sbjct 1028 GTAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAG-AATA-AAGAAGCTAGTGTTG 1085
Query 719 CTCTTCTTAAAAATCTTGTAGACGAATGGAAG-GATCATTCTCG--CAAACTATCATCAT 775
|| |||||||||| |||||||| ||| || | ||| ||| || ||||||| ||||||
Sbjct 1086 CTGTTCTTAAAAAGCTTGTAGATGAAAGGG-GTGAT-ATT-TCCATCAAACTAGCATCAT 1142
Query 776 CACGGAGTAATAC-TCTCACTCTCAATCAAACTATGAAGAGCTTCAGGCTAAAA 828
||| |||| ||| | |||| ||||||||||||||| ||||| |||||||||||
Sbjct 1143 CACCGAGTCATAAAT-TCACACTCAATCAAACTATGGAGAGCATCAGGCTAAAA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5