BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg345677 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 401 5e-111 AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, ... 342 3e-93 > AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317 Length=2317 Score = 401 bits (217), Expect = 5e-111 Identities = 346/408 (85%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 427 CTTGCTGCGGCTTACCTTCCCCCTGAC-TCATCCGCAAGAGTAAAGGCTACAGCA-AGGT 484 |||| |||||||||| || ||||| | ||||| ||||||||||||||||||| | |||| Sbjct 1244 CTTGTTGCGGCTTACATT--CCCTG-CATCATCTGCAAGAGTAAAGGCTACAG-AGAGGT 1299 Query 485 TTGAGGCAATTTATCCCTTGTTGAAGGAATTGGCTCTTGCCGGTACACCAGGAGGCGAGG 544 |||||||||| ||||||||| |||| ||| |||||||||| ||| |||||||| || ||| Sbjct 1300 TTGAGGCAATATATCCCTTGCTGAAAGAAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGG 1359 Query 545 CTATGAAAAAAGGCGCTCGACAGATATTTATTTTTTCTTTGAGATTAGCTGGGGGAGCAA 604 | |||||| ||| | | | ||||||||| | |||| || ||| ||||||||| | || || Sbjct 1360 CGATGAAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAA 1419 Query 605 ATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAACATAG 664 |||||||||||||||||||||||||| |||| ||||||||| || ||||| ||||| | | Sbjct 1420 ATCCTGTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGACCCAAAACTTTG 1479 Query 665 TTTGCTGCAATCACTGGGACAATCTCTACGAGAATAATCTAAAAGCTAGTGTTGCTCTTC 724 ||||||||| |||||||||||||||||| || | ||||| |||||||||||||| ||| Sbjct 1480 ATTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTC 1539 Query 725 TTAAAAATCTTGTAGACGAATGGAAGGATCATTCTCG-CAAACTATCATCATCACGGAGT 783 ||||||| ||||| || |||||||| || ||||| | ||||||||||||||||| || | Sbjct 1540 TTAAAAAGCTTGTTGAAGAATGGAAAGAGCATTCG-GTCAAACTATCATCATCACCGAAT 1598 Query 784 AATACTCTCACTCTCAATCAAACTATGAAGAGCTTCAGGCTAAAAGAA 831 || ||||||||||||| | ||||||||| |||||||||||||| ||| Sbjct 1599 GATGCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAA-GAA 1645 > AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707 Length=1707 Score = 342 bits (185), Expect = 3e-93 Identities = 342/414 (83%), Gaps = 26/414 (6%) Strand=Plus/Plus Query 427 CTTGCTGCGGCTTACCTTCCCCCTGAC-TCATCCGCAAGAGTAAAGGCTACAGCA-AGGT 484 |||| |||||||||| || ||||| | ||||| | ||||||||||||||||| | |||| Sbjct 796 CTTGATGCGGCTTACATT--CCCTG-CTTCATCTGAAAGAGTAAAGGCTACAG-AGAGGT 851 Query 485 TTGAGGCAATTTATCCCTTGTTGAAGGAATTGGCTCTTGCCGGT-ACACCAGGAGGCGAG 543 ||||||||||||||||||||||||||||| ||||||||||| || | ||||||| ||||| Sbjct 852 TTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGA-ACCAGGAAGCGAG 910 Query 544 GCTA-TGAAAAAAGGCGCTCGACAGATATTT-ATTTTTTCTTTGAGATTAGCTGGGGGA- 600 || ||||| ||| | ||| ||| ||||| ||| || |||||| | ||||||| || Sbjct 911 T-TAATGAAACAAGTCACTCAACAAATATTCCATTATT-CTTTGATAATAGCTGGAAGAA 968 Query 601 GCAAATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAAC 660 | ||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 969 G-AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAAC 1027 Query 661 ATAGTTTGCTGCAATCACTGGGACAATCTCTAC-GAGAATAATCTAA-AAGCTAGTGTTG 718 ||| ||||||||| || ||||| || ||||| | || ||| || |||||||||||| Sbjct 1028 GTAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAG-AATA-AAGAAGCTAGTGTTG 1085 Query 719 CTCTTCTTAAAAATCTTGTAGACGAATGGAAG-GATCATTCTCG--CAAACTATCATCAT 775 || |||||||||| |||||||| ||| || | ||| ||| || ||||||| |||||| Sbjct 1086 CTGTTCTTAAAAAGCTTGTAGATGAAAGGG-GTGAT-ATT-TCCATCAAACTAGCATCAT 1142 Query 776 CACGGAGTAATAC-TCTCACTCTCAATCAAACTATGAAGAGCTTCAGGCTAAAA 828 ||| |||| ||| | |||| ||||||||||||||| ||||| ||||||||||| Sbjct 1143 CACCGAGTCATAAAT-TCACACTCAATCAAACTATGGAGAGCATCAGGCTAAAA 1195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5