BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345680
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39040.1 | Symbols: | Peroxidase superfamily protein | chr2... 1496 0.0
> AT2G39040.1 | Symbols: | Peroxidase superfamily protein | chr2:16299351-16301227
REVERSE LENGTH=1219
Length=1219
Score = 1496 bits (810), Expect = 0.0
Identities = 971/1047 (93%), Gaps = 17/1047 (2%)
Strand=Plus/Plus
Query 6 TAAGAGTTTAGAGATTCGGTTTTTATTTCCACTTGTTTTG--TTT--TTG-G----TACT 56
|||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||
Sbjct 63 TAAGAGTTTAGAGATTCGGTTTTTATTTCCACTTGTTTTGTTTTTGGTTGTGAAATTACT 122
Query 57 TTGTGTTGATGGT-AAGAGATTCAATAATAATGGCCACAAGATGAGAAAAGGCAGATGGG 115
||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 123 TTGTGTTGATGGTAAAG-GATTCAATAATAATGGCCATAAGATAAGAAAAGGAAGATGGG 181
Query 116 AAGGTAAGCTGAAGATGAACTTCTATCACAAAAGTTGTCCTAAAGCTGAGGAAATCGTGA 175
||||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||
Sbjct 182 AAGGTAAGCTGAAGATGAACTTCTATCACAATAGCTGCCCTGGAGCCGAGGATATCGTG- 240
Query 176 AAG-AGATTGTGTCGAAGAAAGTCGCAGAAAACCCTAGCTTGGCTCCCAAGTTACTAAGG 234
| | |||| |||| ||||||||||| || ||||| |||| |||||||||||||||| |||
Sbjct 241 AGGCAGATAGTGTGGAAGAAAGTCGAAGCAAACCGTAGCCTGGCTCCCAAGTTACTGAGG 300
Query 235 GTTCATTACCATGACTGCTTTGTTAGGGGGTGCGACGCATCACTGCTTTTAGATTCAGTT 294
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 301 GTTCATTACCATGACTGCTTTGTTAGGGGGTGCGACGCATCGCTGCTTTTAGATTCGGTT 360
Query 295 GCTGGAAAAGCCGCGTCCGAGAAGGAAGCCAGACCTAATCTCTCGCTATCCGGGTTCGAA 354
||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 361 GCTGGAAAAGCAGTGTCCGAGAAGGAAGCGAGACCTAATCTCTCGCTTTCCGGGTTTGAA 420
Query 355 ATCATCGATGAGATCAAGTCCATTCTCGAAAAACGATGCCCTAAAACCGTCTCTTGCGCA 414
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 421 ATCATCGATGAGATCAAGTATATTCTCGAAAAACGATGCCCTAACACCGTCTCTTGCGCT 480
Query 415 GACATTCTCACCTTAGCCGCCAGAGATGCCGTCTCATATGAATTTGAACGGCCGCTATGG 474
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GACATTCTCACTTTAGCCGCCCGAGATGCCGTCTCTTATGAATTTGAACGGCCGCTATGG 540
Query 475 AATGTGTTTACGGGTCGTGTTGATGGACGAGTTTCATTGGCAACGGAGGCGGCCAGAGAC 534
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AATGTGTTTACCGGACGTGTTGATGGAAGAGTTTCATTGGCAACGGAGGCGGCCAGAGAC 600
Query 535 TTACCGTCCGCTGGGGCAAACTTCACCACTCTACAGAAACTCTTTGCCGAAAGCGATTTG 594
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 TTACCATCCGCTGGGGCAAACTTCACCACTCTACAGAAACTCTTTGCCGAGAGCGATTTG 660
Query 595 GACGTCGTTGACCTCGTCGCTTTATCAGGAGCACACACGATAGGAATAGCACATTGCGGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACGTCGTTGACCTCGTCGCTTTATCAGGAGCACACACGATAGGAATAGCACATTGCGGT 720
Query 655 GTGTTTGGTC-GGAGGCTCTTAAACTTCACCGGAAAAGGAGACACAGATCCTTCTCTGAA 713
|||||||| | | |||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 721 GTGTTTGG-CAGAAGGCTCTTGAACTTCACCGGAAAAGGGGACACAGATCCTTCCCTAAA 779
Query 714 CTCTAGCTACGCCTCCTTACTCAAATCCGAATGCTCCGACAAATCTCTAAGATTCAACTC 773
| |||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 780 CCCTAGTTACGCCTCCTTCCTCAAATCCGAATGCTCCGACAAATCTTTAAGACTCAAC-C 838
Query 774 C-TCCGCAGTGGTTGGAATGGACCCTACCGGGCCTCTCACCTTTGACAGTGGCTACTTCG 832
| ||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 839 CTTCCGCAGTGGTCGGAATGGACCCTACTGGTCCTCTCGCCTTTGACAGTGGCTACTTCG 898
Query 833 TCTCTCTCCTCAAGAACAAAGGACTCTTCACCTCCGACGCCGCCTTGTTGACTGATCCCT 892
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCTCTCTACTCAAGAACAAAGGACTCTTCACCTCCGACGCCGCCTTGTTGACTGATCCCT 958
Query 893 CCGCCGCTCACATTGCTAGTGTTTTCCAAAACTCCAAAACTTTTCTTGCTCAGTTTGGTC 952
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 CCGCCGCTCACATTGCTAGTGTTTTCCAAAACTCCGGCGCTTTTCTTGCTCAGTTTGGTC 1018
Query 953 GGTCCATGATCAAGATGAGTTCCATTAAAGTCCTTACTCTTGGAGATCAAGGTGGTGAGA 1012
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTCCATGATAAAGATGAGTTCCATCAAAGTCCTTACTCTTGGAGATCAAGGTGGTGAGA 1078
Query 1013 TTCGTAGAAATTGTCGCCTCGTCAACT 1039
|||||| ||||||||||||||||||||
Sbjct 1079 TTCGTAAAAATTGTCGCCTCGTCAACT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5