BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345735
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferas... 1546 0.0
> AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase
family protein | chr2:16501623-16504304 FORWARD LENGTH=1331
Length=1331
Score = 1546 bits (837), Expect = 0.0
Identities = 941/992 (95%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 1 ATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTCACTCTTGCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 182 ATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTTACACTCGCT 241
Query 61 CACTTT-ATAATCTCGGGTCTTCACTTTCTCGGCGCAATAGATCGTGTTGACAAAGATGT 119
|| ||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 242 CA-TTTCATAATCTCGGGTCTTCATTTTCTCGGCGCAAGAGACCGTGTTGATAAAGATGT 300
Query 120 TGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCCTTCCTAGTAACAGAGTTTCACTGAAAGA 179
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 301 TGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCTTTCCTACTAACAGAGTTTCACTGAAAGA 360
Query 180 TGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGG 420
Query 240 GGATTTAATTCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCCTTGGCCATTCTTAA 299
|||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 421 GGATTTAAAGCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCTTTGGCTATTCTGAA 480
Query 300 GGTCATTGGACATGATCTCTCGATCATCGACTCTGAGTCGGTACTGTTTTCCATGAAAAA 359
||||||||||||||||||||||| ||||||||| | || | || ||||||||| |||
Sbjct 481 GGTCATTGGACATGATCTCTCGACCATCGACTCAAAATCATTGCTAATTTCCATGATAAA 540
Query 360 CCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGCGGAGAAACGGATCTTCG 419
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 541 CCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGAGGTGAAACGGATCTTCG 600
Query 420 ATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAATTGGAGTGGAATGGACAA 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 601 ATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAGTTGGAGTGGAATGGATAA 660
Query 480 GGAGAGCGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGCTTTGGGTTGAT 539
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 661 GGAGAGTGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGTTTTGGATTGAT 720
Query 540 CCCTGGTTCTGAGTCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGAT 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCCTGGTTCTGAATCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGAT 780
Query 600 GGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTC 840
Query 660 ATTACTTCTCAACTGGTGCCTACAGAGACAAGGCAA-TGATGGTGGGTTTCAAGGTAGGA 718
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 841 ATTACTTCTCAACTGGTGCCTACAGAGACAAG-CAAATGATGGTGGGTTTCAAGGTAGGA 899
Query 719 CTAATAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTCATAG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 CTAACAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTTATAG 959
Query 779 GAGGCGATGCATTGATTGACAAAATTGCTCTGCGCAAATTTTTACTGAGTTGTCAGTCCA 838
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 960 GAGGCGATGCATTGATCGACAAAATGGCTCTGCGCAAATTTTTAATGAGTTGTCAGTCCA 1019
Query 839 AGTATGGTGGATTCAGTAAATTCTCCGGACAATTACCGGATCTGTATCATTCATACTACG 898
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1020 AGTATGGTGGATTCAGTAAATTCCCCGGACAATTACCAGATCTGTATCATTCATACTACG 1079
Query 899 GTTACACGGCTTTCAGCCTCTTGGAGGAACCGAGCTTGAGTCCTCTATGTCCTGAGCTAG 958
||||||||||||| || |||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1080 GTTACACGGCTTTTAGTCTCTTGGAAGAACAGGGCTTGAGTCCTCTATGTCCTGAGCTAG 1139
Query 959 GGTTACCTCTTCTTGCAGCCTCGGGGATTTGA 990
| |||||||||||||||||| |||| ||||||
Sbjct 1140 GTTTACCTCTTCTTGCAGCCCCGGGAATTTGA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5