BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345747
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08570.1 | Symbols: ACHT4 | atypical CYS HIS rich thioredox... 346 9e-95
> AT1G08570.1 | Symbols: ACHT4 | atypical CYS HIS rich thioredoxin
4 | chr1:2712892-2714734 FORWARD LENGTH=1417
Length=1417
Score = 346 bits (187), Expect = 9e-95
Identities = 207/217 (95%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 102 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCATTGGCAAAGCA 161
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCA 778
Query 162 TGGTCCAGATAGGTGCAGCCTTGGACGGACTAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 221
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 779 TGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 838
Query 222 ACTTGCAGCCAACAAAGATCTCAACTTTACTTACAGACCAAAGCATGTACCAGTTGAGAA 281
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 839 ACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 898
Query 282 AGAAGCAGCCACTCCTAATTTAAACCCAAGCCTCCCT 318
|||||||||||||||| ||| ||||||||| ||||||
Sbjct 899 AGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5