BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345760
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39790.1 | Symbols: | Mitochondrial glycoprotein family pro... 1059 0.0
> AT2G39790.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr2:16594833-16595800 FORWARD LENGTH=723
Length=723
Score = 1059 bits (573), Expect = 0.0
Identities = 679/730 (93%), Gaps = 8/730 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTTGTTGCGTACGCAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 60
|||||||||||||| |||||||||| ||||||| ||||| | ||||||| |||||||| |
Sbjct 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60
Query 61 GTCCGGTCTATCTCCGCGGTTATGAACCATCCGTCTCTAGATTTCAACCCCTCTCCGATG 120
| ||||||||||||||| ||| |||||| ||||||||| | | ||||||| |||||| ||
Sbjct 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120
Query 121 AGTCCTTTCGTCTCTCGTGGCTTT-TTTAACTCGATGGCTGTTGATAAGCTGAGCCCTGA 179
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||
Sbjct 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTT-ACACGATGGCTGTTGATAAGCTGAGCTCTGA 179
Query 180 GCAAAGCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239
Query 240 CAATTTAGAGCAGAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTTAAAATTAGAGACAA 299
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAATTT------GAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAGAGACAA 293
Query 300 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGATGAACATATTCATATTGA 359
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 294 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGACGAACGTATTCATGTTGA 353
Query 360 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTCGTAATGATGA 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 354 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGA 413
Query 420 ACTAAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAACGCAGTCAGGATAGAGTTTAC 479
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 414 ACTAAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTAC 473
Query 480 CTGCAACGCTTATGCTGATTATATTGACTTAACAGATTTAACCGTGCATGATTATCCCTT 539
|||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 474 CTGCCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATTATCAGTA 533
Query 540 TCCAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 593
Query 600 GTTCCACAGGTATCTGGCGACCAGACTTGAAGCAAGCATAACGAAACTCTTGCACAAGTA 659
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 594 GTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTTGCATAAGTA 653
Query 660 CATGGTGGGCAAAACAAAGCGAGAGTACTTGTTATGGTTGAAGAATGTTAAGAAGTTTGT 719
||||||| |||||| |||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 654 CATGGTGAGCAAAATAAAGAGAGAGTACTTGCTATGGTTGAAGAATGTTAACAAGTTTGT 713
Query 720 GGATGGATGA 729
||||||||||
Sbjct 714 GGATGGATGA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5