BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345842
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein | c... 872 0.0
AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein | c... 353 9e-97
> AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein |
chr2:16892024-16892790 REVERSE LENGTH=630
Length=630
Score = 872 bits (472), Expect = 0.0
Identities = 571/618 (92%), Gaps = 9/618 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACACAAAGCAACAAAGAGGTTTTCTTAGGTGGATTTAAGAAACTCTTGAATGAA 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACACAAAGCAACAAAGAGGCTTTCTTAGGTGGATTTAAGAAACTCTTGAATGAA 60
Query 61 AAATGGCAAGCCGATGTACGCCTCAAGGCAGGAGACAGTGATGAGAGTGCATCCATCTTT 120
||||||||||||||||||| ||||||||||||||||||||||||| | |||| || |||
Sbjct 61 CAATGGCAAGCCGATGTACGTCTCAAGGCAGGAGACAGTGATGAGACTACATCTAT-TTT 119
Query 121 -GCCCACAAGCTTGTCTTGGTAGCAAGATCAGAGGTGTTTAAGAACATATTGGAATCAGA 179
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CGCCCACAAGCTTGTCTTGGTGGCAAGATCAGAGGTGTTTAAGAAGATATTGGAATCAGA 179
Query 180 CGAGTTCAAGGCTTCAGCTAAGCTGGTTGAGACAGTCACTCTCTCGGAGATGAAACACGA 239
|||||||||||||||| |||| | | | ||||||||||| ||||||||||||||||||||
Sbjct 180 CGAGTTCAAGGCTTCATCTAAACAGATGGAGACAGTCACCCTCTCGGAGATGAAACACGA 239
Query 240 AGAAGTAGAGGCTTTAGTGGAGTTCATCTATAGCGTTGATGGCTCCATTTGTTCTGCTAG 299
|||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AGAATTGGAGGCTTTTGTGGAGTTCATCTATAGGGTTGATGGCTCCATTTGTTCTGCTAG 299
Query 300 TGTCAAGAAACATGCTCGGTCACTCTTTCTTGCAGCCGACAAATATGAGATTCCGCTTCT 359
| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 300 TCTCAAGAAACATGCTCGTTCACTCTTTCATGCAGCCGACAAATATGAGATTCCGCATCT 359
Query 360 AAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTTAGCAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTTAGCAT 419
Query 420 CCTGGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATGCCGCTTTCACTACTAT 479
||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 420 CCTTGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATCCCGCCTTCACTACTAT 479
Query 480 TTTAACCAATATGAA-TACCATTGCTAGTTGTGATGAGTTCAAGCTGTTTGTCGTCAATC 538
|||||||||| || ||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct 480 CATAACCAATAT-AAGTACGATTGCTAGTGGTGATGAGTTCAAGCTGTTTGTCGCCAATC 538
Query 539 ACCCAAATCTTGCCGTGGAGATAATGAAGGCTTATGTAACTCGTGC-AAGTA-TAACaaa 596
||||||||||||||||||| ||||||||||||| | ||||| | | ||||| || || |
Sbjct 539 ACCCAAATCTTGCCGTGGATATAATGAAGGCTTCTATAACTAGA-CTAAGTACTAGCAGA 597
Query 597 aaaaT--GTGGTTACTGT 612
||||| |||||||||||
Sbjct 598 AAAATCTGTGGTTACTGT 615
> AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein |
chr5:19658080-19658882 FORWARD LENGTH=675
Length=675
Score = 353 bits (191), Expect = 9e-97
Identities = 458/583 (79%), Gaps = 33/583 (6%)
Strand=Plus/Plus
Query 1 ATGGCAACACAAAGCAACAAAGAGGTTTTCTTAGGTGGA-TTTAAGAAACTCTT-GAATG 58
|||||||| | || |||||||||| ||||| |||||| || | || | || | | |
Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCA-AAGGTTTTGGCA-G 58
Query 59 AAAAATGGCAAGCCGATGT-ACGCCTCAAGGC-AGGAGACAGTGATGAGAGTGCATCCAT 116
|||||||||||| || || | | |||||||| | || | ||||||||| || || | ||
Sbjct 59 AAAAATGGCAAGTTGACGTAATG-CTCAAGGCAAAGA-ATAGTGATGAGGGTTCAGCTAT 116
Query 117 CTTTGCCCACAAGCTT-GTCTTGGTAGCAAGATCAGAGGTGTTTAAGAACATATTGGAAT 175
|| ||||||||| ||| || ||| | ||||||| ||||| |||||||| || || ||||
Sbjct 117 CTCTGCCCACAAACTTATTC-TGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAAT 175
Query 176 CAGACGAGTTCAAGGCTTCAG-CTAAGC-TGGTTGAGACAGTCACTCTCTCGGAGATGAA 233
||||||||||||| |||| | |||| | | || || ||| | ||||| || ||||||||
Sbjct 176 TAGACGAGTTCAAGACTTC-GACTAAACAT-GTGGAAACAATTACTCTTTCAGAGATGAA 233
Query 234 ACACGAAGAAG-TAGAGGCTTTAGTGGAGTTCATCTATAGC-GTTGATGGCTCCAT-TTG 290
||| |||| || |||| ||||| || ||||| | ||| || | ||||||||| || |
Sbjct 234 ACATGAAG-AGTTAGAAGCTTTTGTTGAGTT--TATAT-GCAG-TGATGGCTCAATGCT- 287
Query 291 TTCTGCTAGTGTCAAGA-AACATGCTCGGTCACTCTTTCTTGCAGCCGACAAATATGAGA 349
|||||| | || || | |||||||||| ||||||| |||||| || || || |||||||
Sbjct 288 TTCTGCCAACGTGAA-ACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGA 346
Query 350 TTCCGCTTCTAAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATG 409
||| || |||| ||||||||||||||| |||||||||||| ||| ||| || || ||||
Sbjct 347 TTCTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATT 406
Query 410 CTCTTAG-CATCCTGGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATG-CCGC 467
||||| | | |||| | |||||| ||||||||||||||||||| |||||| |||| |
Sbjct 407 CTCTT-GACCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAG- 464
Query 468 TTTCA-CTACTATTTTAACCAATATGAA-TACCATTGCTAGTTGTGATGAGTTCAAGCTG 525
||||| || ||| || ||||| || ||| |||||||| | ||||||||||||| ||
Sbjct 465 TTTCAGTTA-TATAAAAAATAATAT-AAGTACGATTGCTAGCTCTGATGAGTTCAAGTTG 522
Query 526 TTTGTCGTCAATCACCCAAATCTTGCCGTGGAGATAATGAAGG 568
|| |||| | | ||||||||||||||||||||||||||||||
Sbjct 523 TTCGTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGG 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5