BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345894
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40980.1 | Symbols: | Protein kinase superfamily protein | ... 2442 0.0
> AT2G40980.1 | Symbols: | Protein kinase superfamily protein
| chr2:17102090-17104802 FORWARD LENGTH=2213
Length=2213
Score = 2442 bits (1322), Expect = 0.0
Identities = 1418/1466 (97%), Gaps = 0/1466 (0%)
Strand=Plus/Plus
Query 635 GCGAGGCTCTTTTCTATGCTCTCCGTATACTCATCGCAAGGAGTGTGAGCCGTTTAGATT 694
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 389 GCGAGGCTCTTTTCTATGCTGTTCGTATACTCATCGCAAGGAGTGTGAGCCGTTTAGATT 448
Query 695 TTTCTCAAAGCTCAAACTGTGTCTTCATTCTTCTCGTTGATTCGCAGTATGGATGTGTTG 754
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 449 TTTCTCAAAGCTCAAACTGTGTCTTCATTCTTCTAGTTGATTCGCAGTATGGAGGTGTTG 508
Query 755 TAAAAGTTGAAGGGGACGTAAATAAATTGGATTTTGACTTGAACAATGTTTATGAGTGCG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TAAAAGTTGAAGGGGACGTAAATAAATTGGATTTTGACTTGAACAATGTTTATGAGTGCG 568
Query 815 CAGCAGACTGGATAAAGAAGCATTCCAAGATAGCAGTGTCGCCGGTTGACAGAATATGGA 874
||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 569 CAGCAGATTGGATAAAGAAGCATTCTAAGATAGCAGTGTCACCAGTTGACAGAATATGGA 628
Query 875 ACAAGCTGGGAAATGCCAACTGGGGAGACATTGGTGCTTTACAAGTGGTATTTGCAACTT 934
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 629 ACAAGCTGGGAAATGCCAACTGGGGAGACATTGGTGCTTTGCAAGTGGTGTTTGCCACTT 688
Query 935 ACCATAGTATAATGCAGTACTTTGGAGCACCTAGACATTCCATTGAAGACTTAGCAGCTG 994
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 689 ACCATAGTATAATGCAGTACTTTGGGGCACCCAGACATTCCATTGAAGACTTAGCTGCTG 748
Query 995 ACCATAGTTCTCGCCTTCACTCAAGACGACAGGAGAGGCAGTTGGGAGATACTAGTCTCA 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ACCATAGTTCTCGCCTTCACTCAAGACGACAGGAGAGGCAGTTGGGAGATACTAGTCTCA 808
Query 1055 GTGAGAATGGTATGTTTAGGTTCCAGCAAAGTACCATGTCTCCTGAAATTGTCGAAGTTC 1114
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 809 GTGAAAATGGTATGTTTAGGTTCCAGCAGAGTACCATGTCTCCTGAAATTGTCGAAGTTC 868
Query 1115 AAGAAGAATCAACCAAAATTGAGTCTGAACCTTCGATGAAACTGGAAGTTGGATCGGTTC 1174
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 869 AAGAAGAATCAACCAAAATCGAGCCTGAACCTTCGATGAAACTGGAAGTTGGATCGGTTC 928
Query 1175 TGTGGTTGGAGGAGTCAAACTATCAAAAAGGCTATCAGATTAACGAAATATTGACTAATG 1234
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 929 TATGGTTGGAGGAGTCAAACTATCAAAAAGGTTATCAGATTAACGAAATATTGACTAATG 988
Query 1235 GTACACTCCCTTATCATATCGCATCGCCAGTGGACGATGCAGGGAAGTCTGTGTTTCTGT 1294
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 989 GTACACTTCCTTATCATATTGCATCGCCAGTGGATGATGCAGGGAAGTCTGTGTTTCTGT 1048
Query 1295 ATGTTGGTTCTCCTCCTTCACAGCTTGAGCCAGCTTGGGAAGACATGAACTTGTGGTATC 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1049 ATGTTGGTTCTCCTCCTTCACAGCTTGAGCCAGCTTGGGAAGACATGAACTTATGGTATC 1108
Query 1355 AGGTCCAAAGACAAACTAAGATATTAAGTATAATGAAACAGAGAGGACTGTCTAGCAAAT 1414
|||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1109 AGGTTCAGAGACAGACTAAGATATTAAGTATAATGAAACAGAGAGGACTCTCTAGCAAAT 1168
Query 1415 ACTTGCCGCAGCTTCATGGGTCTGGTCGGATCATTCACCCAGGCCAATGTCAAAAACCAA 1474
|| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1169 ACCTGCCGCAGCTCCATGGGTCTGGTCGGATCATTCATCCAGGCCAATGTCAAAAACCAA 1228
Query 1475 GTTCAGGTGGACGATGCGATCATCCTTGGTGTGGAACTCCCATTCTTGTGACCACTCCTG 1534
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1229 GTTCAGGTGGACGATGTGATCATCCTTGGTGTGGAACTCCCATTCTTGTGACTACTCCTG 1288
Query 1535 TTGGCGAGACAGTAGCTGATTTGGTTAACGAGGGCCGGTTTGGTCCAGAAGAAGCTATTC 1594
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1289 TTGGCGAGACAGTAGCTGATTTGGTGAACGAGGGTCGGTTTGGTCCAGAAGAAGCTATTC 1348
Query 1595 GATGTTGCCATGATTGCTTATCTGCACTTTCTTCATCCTCTTCAGCTGGAATTCGACACG 1654
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GATGTTGCCACGATTGCTTATCTGCACTTTCTTCATCCTCTTCAGCTGGAATTCGACACG 1408
Query 1655 GTGATATCCGCCCAGAAAATGTAGTTTATGTCACTTCTGGCGTAAGACATCCTTACTTTG 1714
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1409 GTGATATCCGCCCAGAAAATGTAGTTTATGTCACTTCTGGTGTAAGACATCCTTACTTTG 1468
Query 1715 TACTAATTGGTTGGGGTCACGCGGTGCTTGAGGATAGAGATCGACCCGCAATGAATCTTC 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TACTAATTGGTTGGGGTCACGCGGTGCTTGAGGATAGAGATCGACCCGCAATGAATCTTC 1528
Query 1775 ACTTCTCCTCGACTTACGCACTCCAGGAAGGGAAACTCTGTGCTGCCTCAGATGCAGAGA 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 ACTTCTCCTCGACTTACGCACTCCAGGAAGGGAAACTCTGTGCTGCCTCAGATGCAGAGA 1588
Query 1835 GCTTGATATACATGCTTTATTTCTGTTCTGGAGACTTACCTGAATTGGATTCAGTTGAAG 1894
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1589 GCTTGATATACATGCTTTATTTCTGTTCTGGAGACTTCCCTGAATTGGATTCAGTTGAAG 1648
Query 1895 GAGCTCTTCAATGGAGAGAGACCTCTTGGTCCAAAAGATTGATTCAGCAGAAGCTCGGTG 1954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1649 GAGCTCTTCAATGGAGAGAGACCTCTTGGTCCAAAAGATTGATTCAGCAGAAGCTCGGCG 1708
Query 1955 ATGTCTCAGCCGTTTTAAAAGCGTTTTCTGACTATGTTGACAGTCTATGTGGGACACCAT 2014
|| ||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1709 ATATCTCAACCGTTTTGAAAGCATTCTCTGACTATGTTGACAGTCTATGTGGGACACCTT 1768
Query 2015 ATCCATTAGATTACGATATTTGGTTGAGAAGATTGAAGAGGAATCTTTCAGAAGATCATG 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1769 ATCCATTAGATTACGATATTTGGTTGAGAAGATTGAAGAGGAATCTTTCAGAAGACCATG 1828
Query 2075 GGAAAGAGATTGAAACTTCAGGCTAA 2100
||||||| |||||| |||||||||||
Sbjct 1829 GGAAAGAAATTGAATCTTCAGGCTAA 1854
Score = 555 bits (300), Expect = 8e-157
Identities = 362/392 (92%), Gaps = 3/392 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGTAAATCTCCAGACCTGGAATCGATAGGGTCTGGTACAACAACAAAGAGGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGTAAATCTCCAGACCTGGAATCGATAGGGTCTGGTACAACAACAAAGAGGTCA 60
Query 61 AGTGTTTCATCAGGGAGTCGATCTCGTACCCGTAGAGATTTCCTTAGTAGATTCACTGAC 120
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 AGTGTTTCATCAGGAAGTCGATCTCGTACTCGTAGAGATTTCCTTAGCAGATTCACTGAC 120
Query 121 AGTGCGCATTTCACTGAAAAGCTTGAGGATTGGTTTGCTTTGACATTGGATAACTCTGCG 180
||| |||||||||||||||||||| ||||||||||||| ||||| || ||||| |||
Sbjct 121 TCTGCACATTTCACTGAAAAGCTTGAAGATTGGTTTGCTTCAACATTAGAAAACTCGGCG 180
Query 181 ACCAGCAATGGACCAGTCTTTGATGTTCCTTTTGAGTTAGTTGAGCTTCAAAAGTTTGAT 240
| | | || ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AGC-G-AA-GGACCGGTCTTTGATGTTCCTTTTGAGTTGGTTGAGCTTCAAAAGTTTGAT 237
Query 241 TATGCATTGGAAGGGATTTCTTTCCAGCAGCTTACTCGGATGCCAAGTCCTATTTACGCT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 TATGCATTAGAAGGGATTTCTTTCCAGCAGCTTACTCGGATGCCAAGTCCTGTTTACGCT 297
Query 301 TCAACGTCTAATGCTGTTGAGGCAAAGTCATATCTAGCTATAGAGGATTTTTTACACGCC 360
|| ||||||||||| | ||||| ||| | ||||||||||| ||||||||| ||||||||
Sbjct 298 TCTTCGTCTAATGCTCTGGAGGCTAAGGCTTATCTAGCTATTGAGGATTTTCTACACGCC 357
Query 361 ACTGTTAAGAGCTTGTGGGAGGCTTTTTGGAG 392
||||||||||||||||||||||| ||||||||
Sbjct 358 ACTGTTAAGAGCTTGTGGGAGGCGTTTTGGAG 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104115930330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5