BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345920
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41260.2 | Symbols: M17, ATM17 | glycine-rich protein / late... 375 1e-103
AT2G41280.1 | Symbols: M10, ATM10 | late embryogenesis abundant... 183 1e-45
> AT2G41260.2 | Symbols: M17, ATM17 | glycine-rich protein / late
embryogenesis abundant protein (M17) | chr2:17206510-17207698
FORWARD LENGTH=1080
Length=1080
Score = 375 bits (203), Expect = 1e-103
Identities = 303/349 (87%), Gaps = 16/349 (5%)
Strand=Plus/Plus
Query 1 ATGAGAAACCTCAAGtctctcgctctcttggctttgctcttttctctctcCCTCGCTGTA 60
||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 32 ATGGGAAACCTCAAGTCTCTCGTTCTCTTGGCTTTGCTCTTTTCTTTCTCCGTCGCTGT- 90
Query 61 TTT-GCGGACACATCCAACGATGCCACACATGCTAAAGATGAAGTGAAGCCAAGTACTGA 119
||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 91 TTTCGCGAACACATCCAACGATGCCACACA--C----GATGAAGTGAAGCCAAGTACTGA 144
Query 120 AGCAAGCGATGCCATAGAGCCGCAACAACGTGAACC-TAAACCCGAGATCGAGGAAGCCC 178
||||| | ||||||||||| ||||| ||| ||| | ||||||| |||||| ||||||||
Sbjct 145 AGCAACCCATGCCATAGAGGCGCAAAAACATGA-CGGTAAACCCCAGATCGCGGAAGCCC 203
Query 179 AAGTCGAGGCCAGTGACGCTGTTGTAGAGCCACAGCAAGTCTGGGGTGG---TGGT--T- 232
|||| ||||||| |||| ||||||||||||| ||||||| ||||||||| |||| |
Sbjct 204 AAGTTGAGGCCAATGACCCTGTTGTAGAGCCCCAGCAAGACTGGGGTGGCCGTGGTGGTT 263
Query 233 GTAGGTTCGGATGTTGCGGTGGGTTGTGGTATGGAGGGTGCCTATACTGTTGCATGAGTC 292
|||||| |||||||||||||||| |||| |||| ||||| ||||||||||| |||||
Sbjct 264 GTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTC 323
Query 293 CAGCCGAGGCCAACGAGGTTGCGGAAACTGTTGAGCCCAACGATGTTGA 341
||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 324 AAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGA 372
> AT2G41280.1 | Symbols: M10, ATM10 | late embryogenesis abundant
protein (M10) / LEA protein M10 | chr2:17209697-17210423
FORWARD LENGTH=602
Length=602
Score = 183 bits (99), Expect = 1e-45
Identities = 130/144 (90%), Gaps = 5/144 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAACCTCAAGtctctcgctctcttggctttgctcttttctctctcCCTCGCTGT- 59
||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 67 ATGGGAAACCTCATGTCTCTCGTTCTCGTGGCTTTGCTCTTTTCTCTCTCCCTTGCTGTT 126
Query 60 ATTTGCGGACACATCCAACGATGCCACACATGCTAAAGATGAAGTGAAGCCAAGTACTGA 119
||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 127 ATT-GCGGACACATCCAACGATGCCACACATGTTAAAGAAGAAGTGAAGCCGAGTACTGA 185
Query 120 AGCAAGC-GATGCCATAGA-GCCG 141
||||| | ||||| ||||| ||||
Sbjct 186 AGCAA-CTGATGCTATAGAAGCCG 208
Score = 165 bits (89), Expect = 3e-40
Identities = 141/165 (85%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 172 GAAGCCCAAGTCGAGGCCAGTGACGCTGTTGTAGAGCCACAGCAAGTCTGG---GGTGGT 228
|||||| ||||||||| || |||||||||||||||||| ||||||| || | ||||||
Sbjct 202 GAAGCCGAAGTCGAGGTCAATGACGCTGTTGTAGAGCCCCAGCAAGGCTTGCCTGGTGGT 261
Query 229 GGTTGTAGGTTCGGATGTTGCGGTGGGT--TG-TGGTATGGAGGGTGCCTATACTGTTGC 285
|||||||||||||||||||||||||||| || ||| ||||| |||| |||||||||||
Sbjct 262 GGTTGTAGGTTCGGATGTTGCGGTGGGTACTGGTGGAATGGACTGTGCATATACTGTTGC 321
Query 286 ATG-AGTCCAGCCGAGGCCAACGAGGTTGCGGAAACTGTTGAGCC 329
| |||| ||||||||||||||| |||| |||||||||||||
Sbjct 322 C-GCAGTCAAGCCGAGGCCAACGAAGTTGTAAAAACTGTTGAGCC 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5