BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg345960 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nu... 398 7e-110 > AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like) family protein | chr2:17347304-17355084 REVERSE LENGTH=3859 Length=3859 Score = 398 bits (215), Expect = 7e-110 Identities = 236/246 (96%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 844 AGGATTGGAGAAAAGAAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 903 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 AGGATTGGAGAAAAG-AAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 558 Query 904 CCTAAAACGAATTTGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 963 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 CCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 618 Query 964 GCTTCGAGTCCTCCAATATCCTCAACACCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 1023 | ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 619 GGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 678 Query 1024 CCCATTCATGAGAAAAAAGCATATGTGTATGGAGAGGTTGTGAAGATACTTAACACTTCA 1083 |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| Sbjct 679 CCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACTTAACACTTCA 738 Query 1084 AGAGAA 1089 |||||| Sbjct 739 AGAGAA 744 Score = 324 bits (175), Expect = 1e-87 Identities = 189/196 (96%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 418 AGGCAGAGAAACTTAATGCTGAAGCAGCTACTGACTGAGATTCTGCCTCGAGAACGCGGT 477 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct 1927 AGGCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGT 1986 Query 478 CTTTGCTTTTTGCTTGGGGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 537 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1987 ATTTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 2046 Query 538 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2047 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 2106 Query 598 GGATTATATGACAAAT 613 |||||||||||||||| Sbjct 2107 GGATTATATGACAAAT 2122 Score = 285 bits (154), Expect = 6e-76 Identities = 168/175 (96%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 661 TCCATAGAGATACAGAAGAGGGTGGGTGCATTTTCGGCTGCCTTGGAGACTATAAACAAG 720 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2122 TCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGAGACTATAAACAAG 2181 Query 721 TGTCTATCTGAAGCCATCTGTTCTTTTGCCCGTGGAAGGTTGGATGGTGAAAGCAGAACA 780 |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 2182 TGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGTGAAAGTAGAACA 2241 Query 781 TCAGGGCTTATTCTTGCAGGGAACGATATTCTTCAGACTTACAAATATTACCCTG 835 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 2242 TCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATATTACCCTG 2296 Score = 89.8 bits (48), Expect = 5e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 364 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACATGCTGCTGCT 414 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1822 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCT 1872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5