BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345960
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nu... 398 7e-110
> AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr2:17347304-17355084 REVERSE
LENGTH=3859
Length=3859
Score = 398 bits (215), Expect = 7e-110
Identities = 236/246 (96%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 844 AGGATTGGAGAAAAGAAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 903
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGGATTGGAGAAAAG-AAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATCAATGCTA 558
Query 904 CCTAAAACGAATTTGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 963
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACTAGTGCCGGTG 618
Query 964 GCTTCGAGTCCTCCAATATCCTCAACACCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 1023
| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 619 GGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCTGGCTAACATA 678
Query 1024 CCCATTCATGAGAAAAAAGCATATGTGTATGGAGAGGTTGTGAAGATACTTAACACTTCA 1083
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 679 CCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACTTAACACTTCA 738
Query 1084 AGAGAA 1089
||||||
Sbjct 739 AGAGAA 744
Score = 324 bits (175), Expect = 1e-87
Identities = 189/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 418 AGGCAGAGAAACTTAATGCTGAAGCAGCTACTGACTGAGATTCTGCCTCGAGAACGCGGT 477
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 1927 AGGCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGT 1986
Query 478 CTTTGCTTTTTGCTTGGGGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 537
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 ATTTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTC 2046
Query 538 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 CCTGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCT 2106
Query 598 GGATTATATGACAAAT 613
||||||||||||||||
Sbjct 2107 GGATTATATGACAAAT 2122
Score = 285 bits (154), Expect = 6e-76
Identities = 168/175 (96%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 661 TCCATAGAGATACAGAAGAGGGTGGGTGCATTTTCGGCTGCCTTGGAGACTATAAACAAG 720
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2122 TCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGAGACTATAAACAAG 2181
Query 721 TGTCTATCTGAAGCCATCTGTTCTTTTGCCCGTGGAAGGTTGGATGGTGAAAGCAGAACA 780
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2182 TGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGTGAAAGTAGAACA 2241
Query 781 TCAGGGCTTATTCTTGCAGGGAACGATATTCTTCAGACTTACAAATATTACCCTG 835
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2242 TCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATATTACCCTG 2296
Score = 89.8 bits (48), Expect = 5e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 364 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACATGCTGCTGCT 414
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1822 CATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCT 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5