BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345991
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41910.1 | Symbols: | Protein kinase superfamily protein | ... 1498 0.0
AT2G41920.1 | Symbols: | Protein kinase superfamily protein | ... 606 1e-172
AT2G05060.1 | Symbols: | Protein kinase superfamily protein | ... 316 2e-85
> AT2G41910.1 | Symbols: | Protein kinase superfamily protein
| chr2:17496956-17498077 FORWARD LENGTH=1122
Length=1122
Score = 1498 bits (811), Expect = 0.0
Identities = 998/1088 (92%), Gaps = 13/1088 (1%)
Strand=Plus/Plus
Query 1 ATGGTACCACCAGAGCTAGAATTCAAAAAGTATCTCGGAAAGGGTTCCTATGGTTCGGTG 60
||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1 ATGGTGCCACCAGAGCTAGAATTCAACAAGTATCTCGGAAAGGGTTCATACGGTTCGGTG 60
Query 61 AGTCTCTTCAAGTATTCGAAACCACACACGACTCTCTACACCGCGGTGAAGACTTGCAAC 120
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 AGTCTTTTCAAGTATTCGAAACCACGCACGACTCTCTACACCGCGGTGATGACTTGCAAC 120
Query 121 TATAAAAACGCCGAGTCTCTCCAGAAAGAGTTTGAAATCTTGTCCCAATTCAAGGGTTGT 180
||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 121 TATAAAAACGCTGAGTCTCTCGAGAAAGAGTTTGGAATCTTGTCTGAATTCAAGGGTTGT 180
Query 181 TCGAGAATCGTCCAGTGCTATGAAAACAGAGTTATAGAGAATCTGGACGTTGAGGGTAAC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGAGAATTGTCCAGTGCTATGAAAACAGAGTTATAGAGAATCTGGACGTTGAGGGTAAC 240
Query 241 CTAGAGTATATGATGCTTATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGGAA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AAAGAGTATATGATGCTAATGGAGTACGCAGCTGGAGGAAGCTTGAGGACTTTCATGAAA 300
Query 301 CGATCCGAAGATAAGAAACTGCCTGATCCTTTGATAAGAGAGTTTACTCGTATGATTCTC 360
|| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 301 CGTTCCGAAGACAAGAAATTGCCTGATCCTTTGATAAGAGAGTTTACTCGAATGATCCTC 360
Query 361 GAAGGCTTAGCCACGATTCACGGACAAGGCTATGTCCACTGCGATCTCAAACCCGGA-AA 419
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 361 GAAGGCTTAGCCACAATTCACGGACAGGGCTATGTCCACTGCGATCTCAAACCC-GATAA 419
Query 420 CATCCTTGTTTTCCCTAA-ATGCGTCTATAAGAAGGGCGCCTGGAGATCGTCTTATGAAT 478
|||||| |||||||| || ||| ||||| |||||| | || |||||||||||||| ||||
Sbjct 420 CATCCTCGTTTTCCC-AAGATGTGTCTACAAGAAGAGAGCATGGAGATCGTCTTACGAAT 478
Query 479 TGAAGATTTCTGATTTTGGGTTGACCAAAAGAGATGGAGACAATAAGTGGTGGCATCCTC 538
||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||
Sbjct 479 TGAAGATTTCTGATTTTGGATTGTCGAAAAGAGATGGAGACAGTAAGTGGTGGCATCCTC 538
Query 539 ATCGCCCGTTCGTGGGAACTGCGATCTATATGTCGCCGGGATCGGTTTCTCATGGCGAGA 598
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 539 ATCGTCCGTTTGTGGGAACTGCGATCTACATGTCGCCGGGATCGGTTTCTCACGGCGAGA 598
Query 599 CAGGGAGAGGACTTGATTTATGGTCATTGGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 CAGGGAGAGGACTTGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
Query 659 AGAAACCATGGTGGCATAATAACTATGACTTGGAG-AGTCTCAAGAAGTGGTACGCGCCA 717
|||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||
Sbjct 659 AGAAACCATGGTGGCATAATAACTATGACTTGAAGGA-TCTCAAGAACTGGTACGCGCCA 717
Query 718 CTGATTCCGAGTGATCTTCCTTGCGATGCTAAACACTTTATCATGGCTTGCTTCACGTTA 777
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 718 ATGATTCCGAGTGATCTTCCTTGCGATGCAAAACACTTTATTATGGCTTGCTTTGCGTTA 777
Query 778 AATACTCATGAGAGAAAAGACGCGTTGACATTGTTGGAGTATAGCTTCTTGCGTGGAGAG 837
||||| | ||||||| |||||| ||||||||||||||| |||||||||||||||| | |
Sbjct 778 AATACAAACGAGAGAAGAGACGCATTGACATTGTTGGAGCATAGCTTCTTGCGTGGGGTG 837
Query 838 GTTAATAAGATCACAAAGCCTCATGTGAAGAATGAGAATAGGAAGGAAATTTCTCTGACA 897
||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| ||
Sbjct 838 GTTAATAAGATCACAAAGCCTCATGTGAAGAATGAGAATCCGAAAGAAATTGCACTGGCA 897
Query 898 TTGAGGAAAGTTCTGAAGAGGCCATCAAAAGTT---ACGTCTC-TTTTCAAAAGAGCGGG 953
||| ||| |||| ||| ||| |||||||||||| ||||| | ||||||||||||| ||
Sbjct 898 TTGGGGAGAGTTGTGAGGAGACCATCAAAAGTTCTTACGTC-CATTTTCAAAAGAGCCGG 956
Query 954 AGAATTGATGAAGATAATCAAGAAGCAGCCAAGACCACCGAGAGCCAATTTGCTTCCTGT 1013
||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 957 AGAGTTGATGAAGATCATCAAGAAGCAGCCAAGAGCACCGAGATCCAATTTGCTTCCTGT 1016
Query 1014 TTACCTTTGTTCCCT-AGCAGAACCATCTCAAAAGATTTGGTTTTTCATTTATAGTTCTC 1072
| || ||||| | || |||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 1017 TCACATTTGT-CACTTAGCACAACCATCTCAAAAGATTTGTTTTTTCATTTATTGTTCTC 1075
Query 1073 TTTGTGTT 1080
||||||||
Sbjct 1076 TTTGTGTT 1083
> AT2G41920.1 | Symbols: | Protein kinase superfamily protein
| chr2:17499404-17500452 FORWARD LENGTH=1049
Length=1049
Score = 606 bits (328), Expect = 1e-172
Identities = 671/833 (81%), Gaps = 38/833 (5%)
Strand=Plus/Plus
Query 44 GTTCCTATGGTTCGGTGAGTCTCTTCAAGT--ATTCGA-AAC-C-AC-AC-ACGACTCTC 96
|||| | ||||||||||||||||||||||| | || ||| | || | | |||||
Sbjct 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGA-GACTCAA 146
Query 97 TACACCGCGGTGAAGACTTGC-AACTATAAAAACGCCGAGTCTCTCCAGAAAGAGTTTGA 155
||| |||| ||||| || | | | | | |||| || |||||||| | ||||||||| |
Sbjct 147 TACGCCGCCGTGAAAACAT-CTAGCGACGAAAATGCTAAGTCTCTCTACAAAGAGTTTCA 205
Query 156 AATCTTGTCCCAATTCAAGGGTTGTTCGAGAATCGTCCAGTGCTATGAAAACAGAGTTAT 215
||| | || ||||||||||||||||||||||||||||| ||||| | || |||| |
Sbjct 206 GATCCTCTCTCAATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAAA 265
Query 216 AGAGA-ATCTGGACGTTGAGGGTAACCTAGAGTATATGA-TGCTTATGGAGTACGCAGCT 273
||||| || | ||| ||||| || |||| || | || ||| |||||||||||| |
Sbjct 266 AGAGATAT-TTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323
Query 274 GGAGGAAGCTTGAG-GACTTTCATGGAACGATCCGAAGATAAG-AAACTGCCTGATCCTT 331
|||||||||||||| || ||||||||| |||| | |||| || ||| || ||||| |
Sbjct 324 GGAGGAAGCTTGAGCGA-TTTCATGGACCGATTCAAAGA-CAGAAAATTGTCTGATTCGA 381
Query 332 TGATAAGAGAGTTTACTCGTATGATTCTCGAAGGCTTAGCCACGATTCACGGACAAGGCT 391
|||| |||||||||||||||||| ||||||| || ||||||||||||||| |||| ||||
Sbjct 382 TGATCAGAGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCACGATTCACAGACACGGCT 441
Query 392 ATGTCCACTGCGATCTCAAACCCGGAAACATCCTTGTTTTCCCTAAATGC-GTCTATAAG 450
|||| ||||||||||||||||||| ||||||||||||||||||| | | | ||||| |||
Sbjct 442 ATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCT-AGTTCTGTCTACAAG 500
Query 451 AAGGGCGCCTGGAGATC-G-TCTTATGAATTGAAGATTTCTGATTTTGGGTTGACCAAAA 508
|| ||||| | | |||| | || || |||||||||||||||||||| ||| || | ||||
Sbjct 501 AACGGCGCGT-G-GATCAGATCCTACGAATTGAAGATTTCTGATTTCGGGATGTCGAAAA 558
Query 509 GAGATGGAGACAATAAGTGGTGGCATCCTCATC-GCCCGT-TCGTGGGAACTGCGATCTA 566
|||||||||||| | |||||||||| |||| | || | | |||||||| |||||||
Sbjct 559 GAGATGGAGACACTCAGTGGTGGCAACCTC-GCAAACCATAT-GTGGGAACACCGATCTA 616
Query 567 TATGTCGCCGGGA-TCGGTTTCTCATGGCGAGACAGGGAGAGGACTTGATTTATGGTCAT 625
||||||||| || ||| | ||||| || |||| ||||| |||||||||||||||||| |
Sbjct 617 TATGTCGCC-TGAGTCGATCTCTCACGGGGAGATAGGGAAAGGACTTGATTTATGGTCGT 675
Query 626 TGGGATGTGTGGTGTTGGAGATGTACACTGGAAAGAAACCATGGTGGCATAATAACTATG 685
||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 676 TGGGATGTGTGGTGTTGGAGATGTACACTAGAAAGAAGCCATGGTGGCATACTAACTATG 735
Query 686 ACTTGGA-GAGTCTCAAGAAGTGGTACGCGCCACTGATTCCGAGTGATCTTCCTTGCGAT 744
| || || ||| |||| |||||| || | ||| || ||||| || ||||||||||||||
Sbjct 736 AATTAGAAGAG-CTCATGAAGTGTTATGAGCCGTTGTTTCCGCGTAATCTTCCTTGCGAT 794
Query 745 GCTAAACACTTTATCATGGCTTGCTTCACGTTAAATACTCA--TGAGAGAAAAGACGCGT 802
|| |||| |||| ||||| | ||||| ||| | || || |||||| ||||| ||||
Sbjct 795 GCAAAACTCTTTCTCATGACCTGCTTTGCGTCCGA-AC-CAGATGAGAGGAAAGATGCGT 852
Query 803 TGACATTGTTGGAGT-ATAGCTTCTTGCGTGGAGAGGTTAATAAGATCACAAA 854
||||||||||| || | |||||||||| |||||| || |||||| |||||||
Sbjct 853 TGACATTGTTG-AGGCAAAGCTTCTTGCATGGAGATGTCAATAAGTTCACAAA 904
> AT2G05060.1 | Symbols: | Protein kinase superfamily protein
| chr2:1798155-1799102 FORWARD LENGTH=948
Length=948
Score = 316 bits (171), Expect = 2e-85
Identities = 328/403 (81%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 481 AAGATTTCTGATTTTGGGTTGACCAAAAGAGATGGAGACAATAAGTGGTGGCATCCTCA- 539
|||||||||||||| |||||| | |||||||| ||||| | ||| ||||||| |||| |
Sbjct 478 AAGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCT-AG 536
Query 540 TCGCCCGTTCGTGGGAACTGCGATCTATATGTCGCCGGGATCGGTTTCTCATGGCGAGAC 599
|| ||||| | |||||| || | ||||||||||| | |||| ||||| | ||||| ||
Sbjct 537 TCATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAACGGCGAAAC 596
Query 600 AGGGAGAGGACTT-GATTTATGGTCATTGGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 AAGGAGAGG-TTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAA 655
Query 659 AGAAACCATGGTGGCATAATAACTATGACTTGG-AGAGTCTCAAGAAGTGGTACGC--GC 715
||| |||||||||| |||| ||||||||||||| ||| ||| ||||| ||| | | ||
Sbjct 656 AGAGACCATGGTGGGATAAGAACTATGACTTGGGAGA-TCTTAAGAAA-GGTTC-CATGC 712
Query 716 CACTGATTCCGAGTGATCTTCCTTGCGATGCTAAACACTTTATCATGGCTTGCTTCACGT 775
|| ||||| ||| ||| ||||||| ||||| |||| |||| | ||| |||||||| |||
Sbjct 713 CATTGATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGT 772
Query 776 TAAATACTCATGAGAGAAAAGACGCGTTGACATTGTTGGAGT-ATAGCTTCTTGCGTGGA 834
| ||| | |||||||| |||| || ||||||||| || || |||||||||||||
Sbjct 773 CGGAGACTAACAAGAGAAAAAACGCTTTCACATTGTTG-AGGCATTGCTTCTTGCGTGGG 831
Query 835 GAGGTTAATAAGATCACAAAGCCTCAT-GTGAAGAATGAGAAT 876
|| ||||||||||||| | |||||| | ||||||| | |||||
Sbjct 832 GATGTTAATAAGATCATAGAGCCTC-TCGTGAAGAGTAAGAAT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5