BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345995
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1188 0.0
> AT2G41950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 53 Blast hits to 53 proteins in 24 species: Archae -
0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17513079-17514167
FORWARD LENGTH=997
Length=997
Score = 1188 bits (643), Expect = 0.0
Identities = 725/765 (95%), Gaps = 4/765 (1%)
Strand=Plus/Plus
Query 30 TTTACCTTCTCTCGTTGCTTTTGATTCTTCGTGTCGTCTCTCTTTGCAACCAAAGAAGCT 89
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
Sbjct 97 TTTACCTTCTCTCGTTGCTTTCGATTCTTCGCGTCGTCTCTCTTTGCAACCAAAGAAGTT 156
Query 90 AAATCGTCTTCAAAGTCACTTCTTTTCTCCTCAACATCTCTCATTCTCTCAGTCTAATGT 149
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 157 AAATCGTCTTCAAAGTCACTTATTTTCACCTCAACATCTCTCATTCTCTCAGTCTAATGT 216
Query 150 CTCTCGTTACAGAGCGTTTTGTGTTTCTTCAAGCTCTCCTCCAGAGGGAACAGTGTCAGT 209
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 217 CTCTCGTTACAGAGCGTTTTGTGTTTCTTCAAGCTCTCCTCCAGAGGGAACAGTCTCCGT 276
Query 210 -GTTCGATTTCCATGAGAAAGATTGGTCCTTTCTTGAATCTATGGAAATTGAATCCACTG 268
|| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 277 AGT-CGATTTCCATGAGAAAGATTGGTCCTTTCTCGAATCTATGGAAATTGACTCCACTG 335
Query 269 AACATACCCAGAAGATCGAAAGGATCATAAAGGCTGGAGAAATATCCGAATCTTCGAGGG 328
||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 AACATACTCAGAAGATTGAGAGGATCATAAAGGCTGGAGAATTATCCGAATCTTCGAGGG 395
Query 329 TTTTGGTTTCAATTAGCTCAGAGTCTTTCGTTGATCGTTTGGTGGAATCTTCACCTTCTC 388
||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||
Sbjct 396 TTTTGGTTTCAATTAGCTCCGAAACATTCGTTGATCGTTTGGTAGAATCTTCACCTTCTC 455
Query 389 AGCTCTTGCTTATTGTCCATGACTCTCTTTTTACGTTAGCCTGTGTCAAAGAGAAATACG 448
|||| ||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 456 AGCTTTTGCTCATTGTCCATGACTCCCTTTTTACGTTAGCCTGTATCAAAGAGAAGTACG 515
Query 449 ACAAAGTCAAATGTTGGCAAGGAGAATTGATCTATGTCCCTGAGAAATGGTCTCCTTTAG 508
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 516 ACAAAGTCAAATGTTGGCAAGGAGAAATGATCTATGTCCCGGAGAAATGGTCTCCATTAG 575
Query 509 ACGTTGTGTTTCTCTACTTTCTTCCAGCTTTGCCTTTTGACCTCGACGACCTGTTCAAGA 568
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 576 ACGCTGTGTTTCTCTACTTTCTTCCAGCTTTGCCTTTTGACCTCGACGAACTGTTCAAGA 635
Query 569 CACTCTCTCAACGTTGTTCCTCAGGTGCACGAGTAGTAATCAGTCACCCGCAAGGTAGAC 628
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 636 CACTCTCTCAACGTTGTTCCTCAGGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGAC 695
Query 629 AAGGCTTGGAGCAGCAAAGGAAAGAGTTTACAGATGTGGTCGTCTCTGATTTACCTGATG 688
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 696 TAGGCTTGGAGCAGCAAAGGAAAGAGTTTTCAGATGTGGTCGTCTCTGATTTACCTGATG 755
Query 689 ATTCCACATTGAGGAATGTTGCTAAGAAGCATTCATTTGAGCTTACCCAGTTTGTTGATG 748
| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 756 AGTCCACATTGAGTAATGTTGCTGAGAAGCATTCATTTGAGCTAACCCAGTTTGTTGATG 815
Query 749 AGCAAGGACTTTATCTCGCTGTTCTGAAATCCT-TCAAACAATAG 792
||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 816 AGCAAGGCCTTTATCTCGCTGTTCTGAAATCCTCT-AAACAATAG 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5