BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346008
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42100.1 | Symbols: | Actin-like ATPase superfamily protein... 1790 0.0
AT2G42170.1 | Symbols: | Actin family protein | chr2:17577714-... 1362 0.0
AT2G42090.1 | Symbols: ACT9 | actin 9 | chr2:17556744-17558369 ... 963 0.0
AT5G59370.1 | Symbols: ACT4 | actin 4 | chr5:23949739-23951837 ... 710 0.0
AT2G37620.1 | Symbols: ACT1, AAc1 | actin 1 | chr2:15779174-157... 702 0.0
> AT2G42100.1 | Symbols: | Actin-like ATPase superfamily protein
| chr2:17560211-17561945 FORWARD LENGTH=1137
Length=1137
Score = 1790 bits (969), Expect = 0.0
Identities = 1085/1141 (95%), Gaps = 8/1141 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATCTAGAG-GACGAATTCGTGCCTATCGTGTGTGACAATGGAACTGGAATGGT 59
||| ||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGGATCTAG-GTGACGAATCCGTGGCTATCGTGTGTGACAATGGAACTGGAATGGT 59
Query 60 CAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTACGTTTCCAAGCGTTGTGGGTCG 119
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 CAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTGTGTTTCCAAGCGTTGTGGGTCG 119
Query 120 TCCACGACACAGGGGAGTGATGGTTGGAATGAATGAGAAGGATTCCTATGTGGGAGACGA 179
|||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||
Sbjct 120 TCCACGACACAGGGGAGTGATGGTAGGAATGGATGAGAAGGATACCTTTGTGGGAGACGA 179
Query 180 AGCTCAAGCCAGGAGAGGTATTCTTACACTTAAATACCCAATCGAGCACGGTGTTGTTAG 239
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 180 AGCTCAAGCCAGGAGAGGTATTCTTTCACTTAAATACCCAATCGAACACGGTGTTGTTAG 239
Query 240 CAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTGGA 299
Query 300 TCCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCCAAAGGCCAATCGTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 ACCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCCAAAGGTCAATCGTGA 359
Query 360 AAAGATGACTCAGATCATGTTTGAGACTTTTGCTTTTCCTAGTATGTATATTGGTATTCA 419
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 360 AAAGATGACTCAGATCATGTTTGAGTCATTTGCTTTTCCTAGTATGTATATTGGTATTCA 419
Query 420 GGCCGTTCTCTCTCTATATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCCGTTCTCTCTCTCTATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGA 479
Query 480 TGGTGTGAGCCACACTGTTCCAATCTACGAAGGTTATGCACTCCCACATGCGATCTTGCG 539
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGTGTGAGCCACACAGTTCCAATCTACGAAGGTTATGCACTCCCGCATGCGATCTTGCG 539
Query 540 TCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTCACGAAAATCATGATGGAACGTGG 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTGACGAAAATCATGATGGAACGTGG 599
Query 600 CTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTG 659
Query 660 TTACATAGCTGTCGACTACGAGCAAGAAATGTTGAAGGCTACAACGAGCTCGGCAATCGA 719
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TTACATAGCTGTTGACTACGAGCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGA 719
Query 720 TA-AAGAATACGAGCTTCCCGATGGTCAAGTGATCACGATAGGAACTGAGAGATTCAGGT 778
|| || ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 720 TAGAACC-TACGAGCTTCCGGATGGTCAAGTGATCACGATAGGAGCTGAGAGATTCAGGT 778
Query 779 GCCCGGAGGTTCTTTTCCAGCCGTCTTTGATTGGAATGGAAACTTGTGGTATTCATGAGA 838
|||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 779 GCCCTGAGGTTCTTTTCCAGACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAGA 838
Query 839 CGACGTACAATTCGATCATGAAGTGTGATGTTGATATAAGGAAGGATTTGTATGGAAACA 898
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 CGACTTACAATTCGATCATGAAGTGTGATGTGGATATAAGGAAGGATTTGTATGGAAACA 898
Query 899 TTGTGTTGAGTGGTGGCACGACCACGTTCCCTGGGATCGCAGATAGGATGAACAAAGAGA 958
|||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||
Sbjct 899 TTGTGTTGAGTGGTGGCACGACGATGTTCCCGGGGATTGCAGATAGGATGAACAAAGAGA 958
Query 959 TCAATGCGCTTGCACCGCCTAGTATGAAGATTAAAA-TTGTGGCTCC-CCCGGAGAGGAA 1016
||||||||||||||||||||||||||||||| |||| |||||||||| |||| | |||||
Sbjct 959 TCAATGCGCTTGCACCGCCTAGTATGAAGAT-AAAAGTTGTGGCTCCTCCCGAA-AGGAA 1016
Query 1017 ATATAGTGTTTGGGTGGGAGGCTCCATTTTGGCTTCTCTAAGCAGCTTTGCACAGATGTG 1076
||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1017 ATATAGTGTTTGGGTTGGAGGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACCGATGTG 1076
Query 1077 GATAACTAAAGCTGATTATGATGAAAATGGACCGTCGATTGTTCACAGGAAATGCTTTTA 1136
||| ||||||||||| ||||| ||| | ||| | |||||||||||||||||||||||||
Sbjct 1077 GATTACTAAAGCTGAGTATGACGAACAGGGAGGGGCGATTGTTCACAGGAAATGCTTTTA 1136
Query 1137 A 1137
|
Sbjct 1137 A 1137
> AT2G42170.1 | Symbols: | Actin family protein | chr2:17577714-17580392
FORWARD LENGTH=1402
Length=1402
Score = 1362 bits (737), Expect = 0.0
Identities = 1015/1146 (89%), Gaps = 32/1146 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGATCTAGAGGACG-AATTCGTGCCTATCGTGTGTGACAATGGAACTGGAATGGT 59
||| |||| |||||| || || || | ||||||||||||||||||||||||||||| |
Sbjct 106 ATGTCGGAAGTAGAGGGCGAAAACCG-GGCTATCGTGTGTGACAATGGAACTGGAATGAT 164
Query 60 CAAGGCGGGAT-TCGCTGGAGACGATGCACCAAGAGCTACGT-TTCCAAGCGTTGTGGGT 117
|||||| |||| | |||||||| ||||||||||| | | || |||||||| |||||||
Sbjct 165 CAAGGCAGGATAT-GCTGGAGAAGATGCACCAAGTG-T-TGTGTTCCAAGCACTGTGGGT 221
Query 118 CGTCCACGACACAGGGGAGTGATGGTTGGAATGAATGAGAAGGATTCCTATGTGGGAGAC 177
||||||| ||| | ||||| |||||| |||||||||||||| |||| | ||||||||||
Sbjct 222 CGTCCACCACATACGGGAGGGATGGTAGGAATGAATGAGAACGATTTATTTGTGGGAGAC 281
Query 178 GAAGCTCAAGCCAGGAGAGGTATTCTTACACTTAAATACCCAATCGAGCACGGTGTTGTT 237
|| ||| |||||||||| ||||| ||||||||| | |||||||| |||||||||||||||
Sbjct 282 GACGCTGAAGCCAGGAGCGGTATACTTACACTTGACTACCCAATGGAGCACGGTGTTGTT 341
Query 238 AGCAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTG 297
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||| ||
Sbjct 342 AGCAATTGGGATGACATGGAGAAGATTTGGTACCATACGTTTTACAGTGAGCTACGTGTG 401
Query 298 GATCCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCC-AAAGGCCAATCG 356
| |||||||||||||||| | |||||||||||||||||||||||||| |||| || ||||
Sbjct 402 GCTCCTGAAGAACACCCTGTGCTTCTCACTGAAGCTCCTCTTAACCCGAAAG-CCGATCG 460
Query 357 TGAAAAGATGACTCAGATCATGTTTGAGACTTTTGCTTTTCCTAGTATGTATATTGGTAT 416
||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 461 TGAGAAGATGACTCAGATCATGTTTGAGACATTTGCTGTTCCTAGTATGTATATTGGTAT 520
Query 417 TCAGGCCGTTCTCTCTCTATATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGG 476
||||||| |||||| || || ||||||||||||||||||||| |||||||||||||||
Sbjct 521 GCAGGCCGCTCTCTCCCTCCATGCCAGTGGTCGTACCACAGGTACTGTGTTGGATTCAGG 580
Query 477 AGATGGTGTGAGCCACACT-GTTCCAATCTACGAAGGTT-ATGCACTCCCACATGCGATC 534
||||||||||||| ||| | ||||||||||||||||||| | |||||||||||||| |||
Sbjct 581 AGATGGTGTGAGCTACA-TAGTTCCAATCTACGAAGGTTCA-GCACTCCCACATGCAATC 638
Query 535 TTGCGTCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTCACGAAAATCATGATGGAA 594
||||| |||||| ||||||||||| |||||||| | || |||| ||||||||||||||||
Sbjct 639 TTGCGGCTAGATTTAGCAGGCCGTCACCTAACCAACTACCTCATGAAAATCATGATGGAA 698
Query 595 CGTGGCTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAG-AA 653
||||||||||||| | | |||||||||||| ||||||||||||||||||| ||
Sbjct 699 CGTGGCTACACAT-C-C-------GCCGAGCGTGAGGTAGTCCGAGACATCAAAGAACAA 749
Query 654 GCTTTG-TTACATAGCTGTCGACTACGAGCAAGAAATGTTGAAGGCTACAACGAGCTCGG 712
|||| |||||||||| | |||||||||||||||||| ||||||||||| ||| ||||
Sbjct 750 --TTTGGTTACATAGCTCTTGACTACGAGCAAGAAATGGAGAAGGCTACAAAGAGTTCGG 807
Query 713 CAATCGATA-AAGAATACGAGCTTCCCGATGGTCAAGTGATCACGATAGGAACTGAGAGA 771
||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 808 CAATCGATAGAACC-TACGAGCTTCCAGATGGTCAAGTGATCACGATAGGAGCTGAGAGA 866
Query 772 TTCAGGTGCCCGGAGGTTCTTTTCCAGCCGTCTTTGATTGGAATGGAAACTTGTGGTATT 831
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 867 TTCAGGTGCCCTGAGGTTCTTTTCCAGCCGTCTTTGATTGGAATGGAAACTTCTGGTATT 926
Query 832 CATGAGACGACGTACAATTCGATCATGAAGTGTGATGTTGATATAAGGAAGGATTTGTAT 891
||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 927 CATGAGAAGACTTACAATTCAATCATGAAGTGTGATGATGATATAAGGAAGGATTTGTAT 986
Query 892 GGAAACATTGTGTTGAGTGGTGGCACGACCACGTTCCCTGGGATCGCAGATAGGATGAAC 951
||||||||||||||||||||||| ||||| | ||||| ||||| | ||| ||||||| |
Sbjct 987 GGAAACATTGTGTTGAGTGGTGGGACGACGATGTTCCGAGGGATTGAAGAGAGGATGACC 1046
Query 952 AAAGAGATCAATGCGCTTGCA-CCGCCTAGTATGAAGATTAAAATTGTGGCTCCCCCGGA 1010
||||||||||||||||||||| |||| || ||||| |||||||||||| |||||||||||
Sbjct 1047 AAAGAGATCAATGCGCTTGCAGCCGC-TAATATGAGGATTAAAATTGTTGCTCCCCCGGA 1105
Query 1011 GAGGAAATATAGTGTTTGGGTGGGAGGCTCCATTTTGGCTTCTCTAAGCAGCTT-TGCAC 1069
|||||||||||||||||| | |||||||||||||||||||||||||||| | | || ||
Sbjct 1106 AAGGAAATATAGTGTTTGGATTGGAGGCTCCATTTTGGCTTCTCTAAGCA-CATATGAAC 1164
Query 1070 AGATGTGGATAACTAAAGCTGATTATGATGAAAATGGACCGTCGATTGTTCACAGGAAAT 1129
|||||||||| ||||||||||| ||||| |||||||||||| | |||||||||| |||||
Sbjct 1165 AGATGTGGATTACTAAAGCTGAGTATGAAGAAAATGGACCGGCCATTGTTCACACGAAAT 1224
Query 1130 GCTTTT 1135
||||||
Sbjct 1225 GCTTTT 1230
> AT2G42090.1 | Symbols: ACT9 | actin 9 | chr2:17556744-17558369
FORWARD LENGTH=1101
Length=1101
Score = 963 bits (521), Expect = 0.0
Identities = 933/1125 (83%), Gaps = 55/1125 (5%)
Strand=Plus/Plus
Query 27 GCCTATCGTGTGTGACAATGGAAC-TGGAATGGT-CAAGGCGGGATTCGCTGGAGACGAT 84
|||||||||||||||||| || || ||||||||| | |||||||||| |||||||||||
Sbjct 6 GCCTATCGTGTGTGACAA-GGGACATGGAATGGTGC-AGGCGGGATTTGCTGGAGACGAA 63
Query 85 GCACC-AAGAGCTACGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGT 143
||||| ||| | | ||||||| | || ||||||||| | || | || ||
Sbjct 64 GCACCAAAG-GTTGTGTTTCCATGTGTCGTGGGTCGT---C--CA-A---GA--GA---- 107
Query 144 TGGAATGAATGAGAAGGATTCCTATGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCT 203
|||| ||||| ||| || || ||||||||||| |||| ||| |||| |||| ||||||
Sbjct 108 TGGATTGAATCCGAACGAATCTTATGTGGGAGAAGAAGGTCATGCCAACAGAGATATTCT 167
Query 204 TACACTTAAATACCCAATCGAGCACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGAT 263
||||||||| ||||||| ||||| ||| | |||| ||||||||||||||||||||||||
Sbjct 168 CACACTTAAAGACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGAT 227
Query 264 TTGGCACCATACTTTTTACAATGAGCTGCGTTTGGATCCTGAAGAACACCCTATTCTTCT 323
||||||| ||||||| ||||| ||||| ||| |||||||||||||||||||| | |||||
Sbjct 228 TTGGCACTATACTTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTCT 287
Query 324 CACTGAAGCTCCTCT-TAACCC-AAAGGCCAATCGTGA-AAAGATGACTCAGATCATGTT 380
||||||||||||| | |||||| ||| ||||||||||| ||| |||||||||||||||||
Sbjct 288 CACTGAAGCTCCT-TATAACCCTAAA-GCCAATCGTGAGAAA-ATGACTCAGATCATGTT 344
Query 381 TGAGA-CTTTTGCTTTTCCTAG-TATGTATAT-TGGTATTCAGGCCGTTCTCTCTCTATA 437
||||| | |||| | ||||| | |||||| | | || || | ||||| | ||| ||
Sbjct 345 TGAGAGC-TTTGATGTTCCT-GCTATGTACGTCT-CCATGCAATCTGTTCTTTATCTCTA 401
Query 438 TTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGATG-GTGTGAGCCACACTG 496
|||||||||||||||||||||| |||||||||||| |||||| | | ||||||||||| |
Sbjct 402 TTCCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGA-GAGGGTGAGCCACACAG 460
Query 497 TTCCAATCTACGAAGGTTATGCACTCCCACATGCG-AT-CTTGCGTCTAGATCTAGCAGG 554
||||| | ||||||||||| ||||||||||| | | || ||| |||||||| || | |||
Sbjct 461 TTCCAGTATACGAAGGTTACGCACTCCCACACG-GTATACTT-CGTCTAGACCTTGGAGG 518
Query 555 CCGTGACCTAACCGAGTATCTCACGA-AAATCATGATGGAACGTGGCTACACATACACCA 613
|||||||||||| || || |||| | ||||||||| ||||||||||||||||||||||
Sbjct 519 CCGTGACCTAACTGACTACCTCA-TAGAAATCATGACCGAACGTGGCTACACATACACCA 577
Query 614 CATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTCG 673
||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 578 CATCCGCCGAGCGGGAAATAGTCCGAGACATCAAAGAGAAGCTTTGTTACGTAGCACTCG 637
Query 674 ACTACGAGCAAGAAATGTTGAAGGCTACAACGAGCTCGG-CAATCGATAAAGAA-TACGA 731
||||||||||||||||| |||| | |||| | | | || ||||||||||| | ||||
Sbjct 638 ACTACGAGCAAGAAATGGAGAAGACAACAAAGGGTT-GGACAATCGATAAA-ACCTACGT 695
Query 732 GCTTCCCGATGGTCAAGTGATCACGATAGGAA-CTGAGAGATTCAGGTGCCCGGAGGTTC 790
||||||||||||||||| ||||||||||| || | |||||||||| |||||| |||||||
Sbjct 696 GCTTCCCGATGGTCAAGAGATCACGATAG-AAGCCGAGAGATTCATGTGCCCCGAGGTTC 754
Query 791 TTTTCCAGCCGTCTTTGATTGGAATGGAAACTTGTGGTATTCATGAGACGACGTA-CAAT 849
|||||||||||||| |||| |||| |||| ||| ||||||||| ||| |||| | ||||
Sbjct 755 TTTTCCAGCCGTCTGTGATCGGAAAGGAATCTTCTGGTATTCACGAGGCGAC-TCGCAAT 813
Query 850 TCGATCATGAAGTGTGATGTTGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGT 909
|| ||| |||||||| |||||||| |||| |||| ||||||| |||||| || ||| |
Sbjct 814 TCCATCTTGAAGTGTCCTGTTGATACGAGGAGGGATATGTATGGTAACATTTTGATGACT 873
Query 910 GGTGGCACGACCACGTTCCCTGGGATCGCAGATAGGATGAACAAAGAGATCAATGCGCTT 969
||||||||||| | ||| | |||||| ||| || |||| ||||||| | ||||| |||
Sbjct 874 GGTGGCACGACGATGTTACATGGGATTAAAGAAAGAATGACCAAAGAGCTAAATGCACTT 933
Query 970 GCACCGCCTAGTATGAA-GATTAAAATTGTGGCTCCCCCGGAGAG-GAAATATAGTGTTT 1027
| |||| | |||||||| | ||||| |||| | ||| ||||| || || | ||||||||
Sbjct 934 GTACCGTCGAGTATGAAAG-TTAAAGTTGTAGTTCCTCCGGAAAGTGAG-TGTAGTGTTT 991
Query 1028 GGGTGGGAGGCTCCATTTTGGCTTCTCTAAGCAGCTTTGCAC-AGATGTGGATAACTAAA 1086
|| | |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 992 GGATTGGAGGCTCCATTTTGGCTTCTCTAAGCACCTTT-CACCAGATGTGGATAACTAAG 1050
Query 1087 GCTGATTATGATGAAAATGGACCGTCGATTGTTCACAGGAAATGC 1131
| ||| ||||| ||| ||||| || ||||||||||||| ||||||
Sbjct 1051 GATGAATATGAAGAACATGGAGCGGCGATTGTTCACAGAAAATGC 1095
> AT5G59370.1 | Symbols: ACT4 | actin 4 | chr5:23949739-23951837
FORWARD LENGTH=1544
Length=1544
Score = 710 bits (384), Expect = 0.0
Identities = 874/1113 (79%), Gaps = 24/1113 (2%)
Strand=Plus/Plus
Query 37 TGTGACAATGGAACTGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCT 96
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 193 TGTGACAATGGAACTGGAATGGTTAAGGCCGGATTCGCGGGTGACGATGCACCAAGAGCG 252
Query 97 ACGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGTTGGAAT-GAATGA 155
||||| ||| |||| || ||||| || |||| ||| |||||||| || || | | |
Sbjct 253 GTTTTTCCGAGCATTGTAGGCCGTCCTCGCCACACGGGTGTGATGGTAGGGATGGGA-CA 311
Query 156 GAAGGATTCCTATGTGGGAGACGAAGCTCAAGCCAGGA-GAGGTATTCTT-ACACTTAAA 213
|||||| | ||||| |||||||| |||||| || | | |||| |||| || || ||
Sbjct 312 AAAGGATGCTTATGTTGGAGACGAGGCTCAA-TCAAAACGTGGTA-TCTTGACTCTGAAG 369
Query 214 TACCCAATCGAGCACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTTGGCACCAT 273
|||||||| ||||| || |||||| ||||||||||||||||||||||||||||| ||
Sbjct 370 TACCCAATTGAGCATGGAATTGTTAATAATTGGGATGACATGGAGAAGATTTGGCATCAC 429
Query 274 ACTTTTTACAATGAGCTGCGT-TTGGATCCTGAAGAACACCCTATTCTTCTC-ACTGAAG 331
||||| ||||||||||| ||| ||| ||||||||||| || |||| || || ||||
Sbjct 430 ACTTTCTACAATGAGCTTCGTGTTGCC-CCTGAAGAACATCCGGTTCT-CTTGACCGAAG 487
Query 332 CTCCTCTTAACCC-AAAGGCCAATCGTGAAAAGATGACTCAGATCATGTTTGAGACTTTT 390
||||||| || || |||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct 488 CTCCTCTCAATCCGAAAG-CTAACCGTGAGAAGATGACTCAGATCATGTTTGAGACATTC 546
Query 391 GCTTTTCCTAG-TATGTATATTGGTATTCAGGCCGTTCTCTCTCTATATTCCAGTGGTCG 449
| |||| | ||||||| ||| ||||| || |||||||| || ||| ||||||| ||
Sbjct 547 AATACTCCT-GCTATGTATGTTGCCATTCAAGCTGTTCTCTCACTCTATGCCAGTGGCCG 605
Query 450 TACCACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACTGTTCCAATCTACGA 509
||| || |||||||| ||||| || |||||||||||||||||||| || |||||||||||
Sbjct 606 TACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTGAGCCACACGGTACCAATCTACGA 665
Query 510 AGGTTATGCACTCCCACATGCGATCTTGCGTCTAGATCTAGCAGGCCGTGACCTAACCGA 569
||||| || |||||||| || ||| | ||||| || |||||||| |||||||| || ||
Sbjct 666 GGGTTACGCTCTCCCACACGCAATCCTACGTCTTGACCTAGCAGGTCGTGACCTCACGGA 725
Query 570 GTATCTCACGAAAATCATGATGGAACGTGGCTACACATACACCACATCCGCCGAGCGTGA 629
| |||| ||||||| | | || ||||| ||| | | ||||||| | || || |||||
Sbjct 726 CCACCTCATGAAAATCCTCACAGAGCGTGGATACTCCTTCACCACAACTGCTGAACGTGA 785
Query 630 GATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTCGACTACGAGCAAGAAAT 689
|| || ||||||| ||||||||||| | |||||| ||| | |||| ||||||||| |
Sbjct 786 AATTGTTAGAGACATGAAAGAGAAGCTCTCTTACATTGCTCTAGACTTCGAGCAAGAGCT 845
Query 690 -GTTGAAGGCTACAACGAGCTCGGCAATCGATAAA-GAATACGAGCTTCCCGATGGTCAA 747
| || | | ||| |||||| | | || ||| | | ||||||||| ||||| |||
Sbjct 846 AGA-GACTTCCAAAACAAGCTCGTCCGTTGAGAAAAGCTT-CGAGCTTCCTGATGGACAA 903
Query 748 GTGATCACGATAGGAACTGAGAGATTCAGGTGCCCGGAGGTTCTTTTCCAGCCGTCTTTG 807
||||| || || ||| | ||||| ||| |||| ||||| ||||| ||||||||||| ||
Sbjct 904 GTGATAACCATTGGAGCAGAGAGGTTCCGGTGTCCGGAAGTTCTGTTCCAGCCGTCAATG 963
Query 808 ATTGGAATGGAAACTTGTGGTATTCATGAGACGACGTACAATTCGATCATGAAGTGTGAT 867
|| |||||||||| | || || ||||| || || || || || |||||||| ||||||
Sbjct 964 ATCGGAATGGAAAATCCAGGAATCCATGAAACCACATATAACTCTATCATGAAATGTGAT 1023
Query 868 GTTGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGTGGCACGACCACGTTC 927
|| ||||| ||||| || |||||||| ||||||||| | |||||||| || || | |||
Sbjct 1024 GTGGATATTAGGAAAGACTTGTATGGTAACATTGTGCTAAGTGGTGGAACCACAATGTTT 1083
Query 928 CCTGGGATCGCAGATAGGATGAACAAAGAGATCAATGCGCTT-G-CACCGCCTAGTATGA 985
||||| | ||||| |||| ||||||||| | | |||| | | || ||||||||
Sbjct 1084 GGAGGGATTGGTGATAGAATGAGCAAAGAGATTAC-G-GCTTTGGCTCCAAGTAGTATGA 1141
Query 986 AGATTAAAATTGTGGCTCCCCCGGAGAGGAAATATAGTGTTTGGGTGGGAGGCTCCATTT 1045
||||||| | |||||||| ||||||||||| || ||||| ||| | || ||||| || |
Sbjct 1142 AGATTAAGGTCGTGGCTCCACCGGAGAGGAAGTACAGTGTATGGATCGGTGGCTCTATAT 1201
Query 1046 TGGCTTCTCTAAGCAGCTTTGCA-CAGATGTGGATAACTAAAGCTGATTATGATGAAAAT 1104
||||||| || |||| |||| || ||||||||||| | ||||| || || |||||| |
Sbjct 1202 TGGCTTCACTCAGCA-CTTTCCAGCAGATGTGGATTGCGAAAGCAGAGTACGATGAATCT 1260
Query 1105 GGACCGTCGATTGTTCACAGGAAATGCTTTTAA 1137
||||| || || || || ||||||||||| |||
Sbjct 1261 GGACCCTCAATAGTGCATAGGAAATGCTTCTAA 1293
> AT2G37620.1 | Symbols: ACT1, AAc1 | actin 1 | chr2:15779174-15781561
FORWARD LENGTH=1618
Length=1618
Score = 702 bits (380), Expect = 0.0
Identities = 879/1117 (79%), Gaps = 46/1117 (4%)
Strand=Plus/Plus
Query 40 GACAATGGAACTGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTACG 99
|||||||||||||||||||| ||||| || || ||||| || |||||||| |||||| |
Sbjct 201 GACAATGGAACTGGAATGGTTAAGGCTGGTTTTGCTGGGGATGATGCACCTAGAGCTGTG 260
Query 100 TTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGTTGGAATGAATG-AGAA 158
||||| || ||||||||||||| || |||| || ||||||||||| ||| | | ||
Sbjct 261 TTTCCTAGTATTGTGGGTCGTCCTCGTCACACCGGTGTGATGGTTGGGATG-GGGCAAAA 319
Query 159 GGATTCCTATGTGGGAGACGAAGCTCAAGCCAGGA-GAGGTATTCTT-ACACTTAAATAC 216
|||| | ||||| || || ||||||||| ||| | |||||||| || || || || |||
Sbjct 320 GGATGCTTATGTTGGCGATGAAGCTCAATCCA-AACGAGGTATT-TTAACTCTCAAGTAC 377
Query 217 CCAATCGAGCACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTTGGCACCATACT 276
|| || ||||| || |||| | |||||||||||||||||||||||||||||| || |||
Sbjct 378 CCTATTGAGCATGGAATTGTCAACAATTGGGATGACATGGAGAAGATTTGGCATCACACT 437
Query 277 TTTTACAATGAGCTGCGT-TTGGATCCTGAAGAACACCCTATTCTTCTCACTGAAGCTCC 335
|| ||||||||||| ||| ||| |||||| ||||| |||||||| || || || || ||
Sbjct 438 TTCTACAATGAGCTCCGTGTTGC-TCCTGAGGAACATCCTATTCTACTTACCGAGGCACC 496
Query 336 TCTTAACCC-AAAGGCCAATCGTGAAAAGATGACTCAGATCATGTTTGAGACTTTTGCTT 394
|||||||| |||| | |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 497 GCTTAACCCGAAAG-CTAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTCAATG 555
Query 395 TTCCTAG-TATGTATATTGG-TATTCAGGCCGTTCTCTCTCTATATTCCAGTGGTCGTAC 452
||| | ||||||| | || ||||||||| ||||| ||||| ||| |||||||||||||
Sbjct 556 CCCCT-GCTATGTATGT-GGCTATTCAGGCTGTTCTTTCTCTTTATGCCAGTGGTCGTAC 613
Query 453 CACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACTGTTCCAATCTACGAAGG 512
|| ||||||||| | || || |||||||||||||||||||||||||| ||||| || ||
Sbjct 614 TACCGGTATTGTGCTCGACTCTGGAGATGGTGTGAGCCACACTGTTCCTATCTATGAGGG 673
Query 513 TTATGCACTCCCACATGCGATCTTGCGTCTAGATCTAGCAGGCCGTGACCTAACCGA-GT 571
|||||||| |||||||| ||| | ||||| ||||| || || |||||||| || || |
Sbjct 674 GTATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGTCGTGACCTCACGGATGC 733
Query 572 ATCTCACGAAAATCATGATGGAACGTGGCTACACATACACCAC-ATCCGCCGAGCGTGAG 630
|| | ||| ||| | | || ||||| ||| | | |||||| | | || ||||||||
Sbjct 734 G-CTGATGAAGATCCTAACCGAGCGTGGTTACTCTTTCACCACCA-CAGCAGAGCGTGAA 791
Query 631 ATAGTCCGAGACATCAAAG-AGAAGCTTTGTTACATAGCTGTCGACTACGAGCAAGAAAT 689
|| ||| ||||||| |||| |||||||||| ||||| ||| | ||||||||||| ||| |
Sbjct 792 ATTGTCAGAGACAT-AAAGGAGAAGCTTTGCTACATTGCTCTTGACTACGAGCAGGAACT 850
Query 690 -GTTGA-AGGCTACAACGAGCTCGGCAATCGATAAAGAA-TACGAGCTTCCCGATGGTCA 746
| || || | | ||| ||||| | | || || ||| |||||||| || ||||| ||
Sbjct 851 CGA-GACAGCCAA-AACCAGCTCATCTGTTGAGAA-GAACTACGAGCTACCTGATGGGCA 907
Query 747 AGTGATCACGATAGGAACTGAGAGATTCAGGTGCCCGGAGGTTCTTTTCCAGCCGTCTTT 806
||||||||| || ||| | ||| ||||| | || || |||||||||| |||||| ||| |
Sbjct 908 AGTGATCACCATTGGATCAGAGCGATTCCGTTGTCCTGAGGTTCTTTACCAGCCATCTAT 967
Query 807 GATTGGAATGGA-AACTTG-TGGTATTCATGAGACGACGTACAATTCGATCATGAAGTGT 864
|||||| ||||| || | | |||||| ||||| || || || || || || |||||||||
Sbjct 968 GATTGGTATGGAGAA-T-GCTGGTATCCATGAAACCACCTATAACTCCATAATGAAGTGT 1025
Query 865 GATGTTGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGTGGCACGACCACG 924
||||| || || |||||||| ||||| || ||||||||| | |||||||| || || | |
Sbjct 1026 GATGTCGACATCAGGAAGGACTTGTACGGTAACATTGTGCTCAGTGGTGGAACCACAATG 1085
Query 925 TTCCCTGGGATCGCAGATAGGATGAACAAAGAGATCAATGCGCTTG-CACC--GCCTAGT 981
|||||||| ||||| || || |||| ||||||||||| ||| ||| | || || ||
Sbjct 1086 TTCCCTGGAATCGCCGACAGAATGAGCAAAGAGATCACTGCT-TTGGCTCCAAGC--AGC 1142
Query 982 ATGAAGATTAAAATTGTGGCTCCC-CCGGAGAGGAAATA-TAGTGTTTGGGTGGGAGGCT 1039
|||||||| ||| | || || ||| || ||||||||||| | ||| ||| | ||||| |
Sbjct 1143 ATGAAGATCAAAGTCGTTGC-CCCTCCAGAGAGGAAATACTC-TGTCTGGATTGGAGGGT 1200
Query 1040 CCATTTTGGCTTCTCTAAGCAGCTTTGCA-CAGATGTGGATAACTAAAG-CTGATTATGA 1097
|||| ||||| || || || | ||| || ||||||||||| | |||| | || |||||
Sbjct 1201 CCATCTTGGCCTCCCTCAGTACCTTC-CAGCAGATGTGGATCGC-AAAGGCAGAGTATGA 1258
Query 1098 TGAAA-ATGGACCGTCGATTGTTCACAGGAAATGCTT 1133
|| | || || ||||||||||||||||| |||||
Sbjct 1259 CGAGTCA-GGTCCATCGATTGTTCACAGGAAGTGCTT 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5