BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346013

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing pr...   472    2e-132


> AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing 
protein | chr2:17572369-17574679 FORWARD LENGTH=2105
Length=2105

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 332/369 (90%), Gaps = 6/369 (2%)
 Strand=Plus/Plus

Query  91    TTGCCTCCAGGACCAGATACGAAAA--TCAAGAAAACAGATCATGTTGTGG-TTGGTGAT  147
             |||||||| ||||||||||  ||||   |||||||||||||||||||||||  |  ||||
Sbjct  1376  TTGCCTCCTGGACCAGATA--AAAAGGCCAAGAAAACAGATCATGTTGTGGACT-ATGAT  1432

Query  148   GAGAAGCCGGTTTCAGACAAGGATGATGAAGCCTCTGGAAAATACGATGGTGAATCTCTG  207
             ||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| ||||||
Sbjct  1433  GAGAAGCCGGTTTCAGACAAGGATGGTGAAGCCTCTGGGAAAGACGATGATGACTCTCTG  1492

Query  208   ATTATGAAGACAATGACTAGAGGAAGAACCTCCTCGACGAAAAAAGTAGCAAACAGGAAC  267
             ||| |||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||
Sbjct  1493  ATTGTGAAGATAATGACTAGAGGAAGAACCTCCTCGACGGGAAAAGTAGCTAACAGGAAC  1552

Query  268   GTCAAGATCCGTGAATCCAGTTTGAATGTTGATGATAGCAAAGGCAAGGTTAAGAAAACT  327
             | ||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  1553  GACAAGAACCGTGACTCCAGTTTGAATGTTGATGATAGCAAAGATAAGGTTAAGAAAACT  1612

Query  328   GATGAAGAGAAGAAAGGAAGCTCAAAAAAGAGAAGTGCTGCGAGTTTTCTCAAGAGAATG  387
             |||||||||||||||||  |||| ||||||| ||| |||||||||||||||| |||||||
Sbjct  1613  GATGAAGAGAAGAAAGGTGGCTCGAAAAAGAAAAGGGCTGCGAGTTTTCTCAGGAGAATG  1672

Query  388   AAAGTGGGTTCTTCGGATGAGACATTGAAGCCTAGCTCTGCGGCTGATTCTTCTACTGCT  447
             |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| | 
Sbjct  1673  AAAGTGGGCTCTTCGGATGACACATTGAAGCGTAGCTCTGCTGCTGATTCTTCTACTACG  1732

Query  448   GGAAAAGGA  456
             |||||||||
Sbjct  1733  GGAAAAGGA  1741



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5