BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346015

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42190.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   422    2e-117


> AT2G42190.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G57930.2); 
Has 1381 Blast hits to 1230 proteins in 175 species: Archae 
- 3; Bacteria - 25; Metazoa - 672; Fungi - 135; Plants - 127; 
Viruses - 30; Other Eukaryotes - 389 (source: NCBI BLink). 
| chr2:17582869-17584194 FORWARD LENGTH=883
Length=883

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 285/311 (92%), Gaps = 9/311 (3%)
 Strand=Plus/Plus

Query  93   TATGAGAAGAGGTAGAGGGAAAGGGAAGAAGCAGAGTGCATCTACTCGGGAAGATCGTGG  152
            ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  313  TATGAGAAGAGGTAGAGGGAAAGGGAAGAAGCAGAATGCATCTGCTCGGGAAGATCGTGG  372

Query  153  AAGCGGTGACGAAGAAAAGATTCCTGCTTACAGGAGAAGAGGGAGGCCACAAAAGCCgat  212
            ||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct  373  AAGCGGTGATGAAGAAAAGATTCCAGCTTACAGGAGAAGAGGAAGACCACAGAAGCCGAT  432

Query  213  gaaagatgatttcgaagaggaagaagaagaagatgaagaagagatggtagagaaaatgga  272
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  433  GAAAGATGATTTCGAAGAGGAAGAAGAAGAAGATGATGAAGAGATGGTAGAGAAAATGGA  492

Query  273  agaagaagatgaaga--aa----ttgatgatgGTTCTGTAACAAGTAAAGATTTGAAGAA  326
            || ||||||||||||  ||    ||||||||||||| ||||||||||||||||||||| |
Sbjct  493  AGTAGAAGATGAAGATGAAGAGATTGATGATGGTTCAGTAACAAGTAAAGATTTGAAGGA  552

Query  327  GGAGAAAAAGAGGAAGATGTCTAATGGAAGCACTACGGATCTAAATGAAGAAGATAATGG  386
            | |||||  ||||||||||||||||||||||| ||| ||||| | ||||||||| |||||
Sbjct  553  G-AGAAA--GAGGAAGATGTCTAATGGAAGCAATACTGATCTGACTGAAGAAGAGAATGG  609

Query  387  GTTAGGATCGA  397
             ||||||||||
Sbjct  610  TTTAGGATCGA  620


 Score =  154 bits (83),  Expect = 8e-37
 Identities = 91/95 (96%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  392  GATCGACATCTATTGGGTTTAGACCAAATGGAAGCCGGAGGAAAAGCAAGCCGAGGCGAG  451
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  645  GATCGACATCTATTGGGTTTAGACAAAATGGAAGCCGGAGGAAAAGCAAGCCGAGACGAG  704

Query  452  CTGCTGAAGCTGTTGTGGAATGTAACGGGGTTTGA  486
            ||||||||||||| |||||||||||||| ||||||
Sbjct  705  CTGCTGAAGCTGTCGTGGAATGTAACGGAGTTTGA  739



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5