BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346029

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12090.1 | Symbols:  | Protein kinase superfamily protein | ...  91.6    9e-18


> AT5G12090.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:3909703-3910877 FORWARD LENGTH=1110
Length=1110

 Score = 91.6 bits (49),  Expect = 9e-18
 Identities = 69/78 (88%), Gaps = 3/78 (4%)
 Strand=Plus/Plus

Query  255  AGACTTCACTCGTATGATCCTTGAAGGACTT-GTCTCTATCCATAGTCACGGTTATGTTC  313
            ||||||||| || ||||| || |||||| || ||||| || |||||||||||||||||||
Sbjct  414  AGACTTCACGCGGATGATTCTCGAAGGA-TTGGTCTCAATGCATAGTCACGGTTATGTTC  472

Query  314  ATTGCGATCTCAAA-CCG  330
            |||||||||||||| |||
Sbjct  473  ATTGCGATCTCAAATCCG  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33405707755


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5