BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346041
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42440.1 | Symbols: | Lateral organ boundaries (LOB) domain... 1050 0.0
> AT2G42440.1 | Symbols: | Lateral organ boundaries (LOB) domain
family protein | chr2:17668701-17669817 REVERSE LENGTH=989
Length=989
Score = 1050 bits (568), Expect = 0.0
Identities = 687/743 (92%), Gaps = 13/743 (2%)
Strand=Plus/Plus
Query 1 ATGACTGGCTCTGGCTCTCCTTGTGGAGCTTGTAAATTCTTAAGAAGGAGATGTGTAAAA 60
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 68 ATGACTGGCTCTGGCTCTCCTTGTGGAGCTTGTAAGTTTTTAAGAAGGAGATGTGTAAAA 127
Query 61 GGATGTGTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCACATTTTGCAGCCATT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 128 GGATGTGTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCCCATTTTGCAGCAATT 187
Query 121 CACCAAGTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAAGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 188 CACCAAGTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAGGAT 247
Query 181 CGACGTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGTCGTCAAGATCCCATT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 248 CGACGTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGCCGTCAAGACCCCATC 307
Query 241 TATGGCTGCGTATCTCATATCTTCTCCCTCCAACAACATGTTGTGAATTTACAAACACAG 300
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 308 TATGGCTGCGTTTCTCATATCTTTTCCCTCCAACAACAAGTTGTGAATTTACAAACACAG 367
Query 301 CTAGAGATTCTAAAGCAACAAGCAAAACAAAGCATGATGGCTACTGATTCTCCATCCATA 360
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 368 CTAGAGATTCTAAAGCAACAAGCAACACAAAGCATGATGGCTATTGATTCTCCCTCCATA 427
Query 361 GAAAACCCTAATTATTATCAAGACACTAAGCCTCAATATCTTCAAGAATCTCATGATCTC 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAAAACCCTAATTACTATCAAGACACTAAGCCTCAATATCTTCAAGAATCTCATGATCTC 487
Query 421 CATCATCAGCATCATCAGACCACTTCGGATTATCAAACGGAGCAACACTGTGATCTAAAG 480
|||||||| |||| | | ||||||||| ||| ||||||||||||| ||| |||||| |||
Sbjct 488 CATCATCATCATC-T-A-ACCACTTCGAATTGTCAAACGGAGCAAAACTCTGATCTTAAG 544
Query 481 AATATCATGACGTCGTGCTACCACCAGAACG-AAACCGGGACGAGGTCGTTCATC-GGAG 538
|| ||||||||||||||||||||||| || | ||| || |||| | |||||| | ||||
Sbjct 545 AACATCATGACGTCGTGCTACCACCA-AATGGAAATCGAAACGACGCCGTTCA-CAGGAG 602
Query 539 CTGGCGGAGATACCACAGCGGCGAGTTACTACTACAACTCCTCTAGTGGCTACAGCGAAG 598
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 603 CTGGCGGAGATACCATGGCGGGGAGTTACTACTACAACTCCTCTAGTGGCTGCAGCGAAG 662
Query 599 AACTTAAATCGGTCTCGACCATCGGCGAATTTTCCAAATACTCTGAAGTGGATCAACAAC 658
|||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| || |
Sbjct 663 AACTTAAATCGGTCTCCACCAACGGCGAATTTTCCAAATACTCTGAATTGGATCAGCA-C 721
Query 659 ACTTGA--A-CACTTTTAATCAATATCATGATGGCGGCAATGATCTGCTATCCGAGAGTT 715
|||| | |||||||||||| |||| | ||||||||||| ||||| ||||||||||||
Sbjct 722 --TTGACGAACACTTTTAATCAGTATCGTCATGGCGGCAATAATCTGATATCCGAGAGTT 779
Query 716 TAGGGTACATTACGTATTCATGA 738
|||||||||| |||||||| |||
Sbjct 780 TAGGGTACATCACGTATTCTTGA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5