BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346044
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 270 1e-71
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 67.6 2e-10
> AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187
REVERSE LENGTH=2697
Length=2697
Score = 270 bits (146), Expect = 1e-71
Identities = 587/790 (74%), Gaps = 70/790 (9%)
Strand=Plus/Plus
Query 47 AGCAAACGAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGGAAGCTGAGATATCGT 106
|||| ||||||||||||||||||||||||||||||| |||||||| || || |||||| |
Sbjct 89 AGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGCGATATC-T 147
Query 107 CTTCGATCTACATTCGAATGCGGTATGTTACCG-TTCATCCCAAGGGA--GACTA-TTGT 162
| | || | ||| | |||| ||| | | || || | ||| | | | |||
Sbjct 148 CCTATAT-T-CATAAGCG-GCGG-ATGCGAATGGTTTATT--A-GGGTTTGGCAAATTGA 200
Query 163 TGTGATCACTTGGCTGTGTACT-TGAATGTTGCTAGTCCTAAATCATTGAA-ATTTGGAT 220
| |||||||||||||| ||| ||| ||| | | || | |||| || | || |||||
Sbjct 201 AG--ATCACTTGGCTGTG-ACTCTGAGCGTTCCGAATCTTGAATCCTT-ACGATATGGAT 256
Query 221 GGAAAAAGAGAGTTA-GTTATGGATTCGTTTTGTTGAATCAATCCGGCAAAGAGCTCCAA 279
|| ||| |||| | || || |||| || ||||||||||||| |||| ||||||| ||
Sbjct 257 GGGAAAGGAGAACCAAGT-ATTCATTCATTGTGTTGAATCAATCAGGCAGAGAGCTCGAA 315
Query 280 ATATCAAGTACACCTGAAGAAGGCAGCT-TGTTCTGTGA-TGAGACCCAA-AGC-TGGGG 335
| | ||| ||||| || || | | |||||| | ||| | | || ||| |
Sbjct 316 ----CGA--ACATTTGAAGTAGA-AGGTCTCTTCTGT-ACTGA-ATT-ATTAGAATGGTG 365
Query 336 TTATCCCAAAGTATTTCCT-CTTAGTAAGCTTAAAAAAGAAGGGTTTCTTGAGAACG-AC 393
| ||||||||||| | ||| | | |||||| || |||| ||| || |||| |
Sbjct 366 TCATCCCAAAGTAATGCCTACGAAC-AAGCTTCAA---GAAG--TTTGTTTAGAAAATAA 419
Query 394 -AAACTGATCGTTAAAGTTGAAGTGGAAA-TAGTTGAAGCTGTTCATGTAGAAGAGGTAA 451
||||||||| || |||| |||| ||| || |||||| |||||||| || || |||||
Sbjct 420 TAAACTGATCATTGAAGTCCAAGTA-AAAGTACTTGAAGTTGTTCATGAAGGAGGGGTAA 478
Query 452 C---TGGGAAGGGGATGTT-ACGTATTAAAGGTTTCGAAGTTC-CTTATACTCAAGGTGT 506
| || ||||| |||||| | |||| | |||||||| |||| || ||||||| |||||
Sbjct 479 CAACTGAGAAGGAGATGTTCAA-TATTGAGGGTTTCGATGTTCTCT-ATACTCA-GGTGT 535
Query 507 TTTAG-TGAGCAAGATTTTCGTA-AAGCACCCGGACATTGCAGTAGATTTCA-AACCAAA 563
| | | ||| | ||||||| || || || |||||||||||||| ||| || |||
Sbjct 536 CTCGGGTCAGCTGGCTTTTCGTGGAA-CATCCAAACATTGCAGTAGATGTCAGAAT-AAA 593
Query 564 GAACCAAGTAG-TGAAGACAGCATACATGAATGTCCTGCTCGGCCTCATCGAGACACT-G 621
|||||| || | ||| ||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct 594 GAACCA-GTTGGTGAGGACGGCATACATTAATGTTCTCCTCGGTCTTATCGAGACACTAG 652
Query 622 CACAAGCCTCCATGTAG-CTTTACTGATACT-ATGCTAAGAAACGCTCACAGCGAGTTGA 679
||| | ||||| | || |||| | || ||| | || ||| ||||||||| ||||||||
Sbjct 653 -ACAGGTCTCCACGGAGTCTTT-CAGAGACTGAC-CTTAGAGACGCTCACATCGAGTTGA 709
Query 680 GCGAGCTAACAGAAGCGGGCTTCAAGCTGGATTGGTTAAAGAAAAAACTTGAGGAGGTTG 739
|||||||||||||||| || |||||| | ||||||||||||||||| ||||||||||||
Sbjct 710 GCGAGCTAACAGAAGCAGGATTCAAGGTAGATTGGTTAAAGAAAAAGCTTGAGGAGGTTT 769
Query 740 CCTTGGAGAGGAAGAATG-CAATTGCCGGTAGTTCTCGGGTCGAAGAATTGGTGGAACG- 797
|||||| ||||||||||| || || | | | |||||| ||| |||||| | | |||||
Sbjct 770 CCTTGGCGAGGAAGAATGACATTT-CTGATGGTTCTCAGGTGGAAGAACTCGAGGAACAT 828
Query 798 GATCAAGAAT 807
| ||||||||
Sbjct 829 G-TCAAGAAT 837
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 67.6 bits (36), Expect = 2e-10
Identities = 60/71 (85%), Gaps = 3/71 (4%)
Strand=Plus/Plus
Query 38 GGAACCAAAAGCAAACGAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGGAAGCTG 97
|||| ||||||| || |||| | |||||||||||||||||||||||||||| ||| ||
Sbjct 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
Query 98 AGATATCGTCT 108
|||| |||||
Sbjct 139 TGATAGCGTCT 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5