BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346045
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 230 2e-59
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 82.4 7e-15
> AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187
REVERSE LENGTH=2697
Length=2697
Score = 230 bits (124), Expect = 2e-59
Identities = 526/710 (74%), Gaps = 68/710 (10%)
Strand=Plus/Plus
Query 39 GAATCAAAAGCAGACAAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGAAAGCTGC 98
|||||| ||||||| |||||||||||||||||||||||||||| ||||||| || |||
Sbjct 81 GAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGC 140
Query 99 GATATCGTCTTCTTTATTCGGCTGCGGCGGATGCGAATGGTATGTTACCGTTTATCCCAA 158
|||||| || || ||||| |||||||||||||||||| | ||| ||||
Sbjct 141 GATATC-TC--CTATATTCATAAGCGGCGGATGCGAATGGTTTATTAGGGTTT------- 190
Query 159 GGGATACTATTGTCGTGATCACTTGGCTGTGA-TCTTGAATGTTGCTAGTCCTAAATCAT 217
|| | | |||| | ||||||||||||||| ||| || ||| | | || | |||| |
Sbjct 191 GGCA-A--ATTGAAG--ATCACTTGGCTGTGACTCT-GAGCGTTCCGAATCTTGAATCCT 244
Query 218 TGA-GA-ACTGGATGGAAAAGAA-AAGTTAGTCCTTGC-TTCGTTTTGTTGAATCAGTCC 273
| | || | ||||||| |||| | || ||| || | ||| || |||||||||| ||
Sbjct 245 T-ACGATA-TGGATGGGAAAGGAGAACCAAGTA-TT-CATTCATTGTGTTGAATCAATCA 300
Query 274 GGCAAAGAGCTCCAAATATTAAGTACATCTGAAGAAGAAGGCAGCTTGTTCTGTGA-T-A 331
|||| ||||||| || | | ||| ||||| |||||| || |||||| | | |
Sbjct 301 GGCAGAGAGCTCGAACGA--A----CATTTGAAGTAGAAGGT--CTC-TTCTGT-ACTGA 350
Query 332 AGGTCCCATCCTGGGGTTATCACAAAGTATTGCCT-CTTAGCAAGCTTACAGAAGAAGAG 390
| | | ||| || ||| ||||||| ||||| | | ||||||| || | ||||
Sbjct 351 AT-TATTAGAATGGTGTCATCCCAAAGTAATGCCTACGAA-CAAGCTT-CA-A-GAAGT- 404
Query 391 TT-TTTAGAGAATGACAAATTGATCATTAAAGTGGAAGTAAAATTAGTTGAAGCTGTTCA 449
|| |||||| ||| | ||| |||||||| |||| |||||||| || |||||| ||||||
Sbjct 405 TTGTTTAGAAAATAATAAACTGATCATTGAAGTCCAAGTAAAAGTACTTGAAGTTGTTCA 464
Query 450 TGAAGAAGAGGTAAC---TGGGAAGGGGATGTAT-AGTCTCAATGGTTTCCA-GATTCTT 504
||||| || |||||| || ||||| ||||| | | | | | |||||| | | ||||
Sbjct 465 TGAAGGAGGGGTAACAACTGAGAAGGAGATGT-TCAATATTGAGGGTTTCGATG-TTCTC 522
Query 505 TATACTCAGGT-TCTTTTAGTGAGCAAGATTTTCGCAAGGCAC--CCGGACATTGCAGTA 561
||||||||||| ||| || ||| | |||||| || || || |||||||||||
Sbjct 523 TATACTCAGGTGTCTCGG-GTCAGCTGGCTTTTCGT--GGAACATCCAAACATTGCAGTA 579
Query 562 GATTTCA-AACCAAAGAGCCAAGTAG-TGAAGACAGCATACATGAATGTCCTCCTTGGCC 619
||| ||| || ||||| ||| || | ||| ||| |||||||| ||||| ||||| || |
Sbjct 580 GATGTCAGAAT-AAAGAACCA-GTTGGTGAGGACGGCATACATTAATGTTCTCCTCGGTC 637
Query 620 TCATCGAGACACT-GCGCAAGCCTCCACAGAG-CTTCTCTGAGACTGAGCTAAGCA-ACG 676
| ||||||||||| | || | |||||| ||| ||| || |||||||| || || | |||
Sbjct 638 TTATCGAGACACTAGA-CAGGTCTCCACGGAGTCTT-TCAGAGACTGACCTTAG-AGACG 694
Query 677 CTTACAGCAAGTTGAGAGAGCTAACAGAAGCAGGCTTCAAGCTGGATTGG 726
|| ||| | ||||||| ||||||||||||||||| |||||| | ||||||
Sbjct 695 CTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCAAGGTAGATTGG 744
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 82.4 bits (44), Expect = 7e-15
Identities = 287/400 (72%), Gaps = 33/400 (8%)
Strand=Plus/Plus
Query 38 GGAATCAAAAGCAGACAAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGAAAGCTG 97
|||||||||||| | |||| | |||||||||||||||||||||||||||||||| ||
Sbjct 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
Query 98 CGATATCGTCTTCTTTATTCG-GCTGCGGCGGATGCGAATGGTATG-TT-ACCGTTTATC 154
|||| ||||| ||||| | | || ||||||||||||| | || ||| | ||||
Sbjct 139 TGATAGCGTCTAAGGCATTCGTGA-GTGGAGGATGCGAATGGT-TCCTTTACC-TCTATC 195
Query 155 CCAAGGGATAC--TATTG-TCG-TGATCACTTGGCTGTG-ATCTTGAATGTTGCTAGTCC 209
| |||||| | | || | | ||||||| || || || |||| | ||||| | |
Sbjct 196 CGAAGGGACAGAGTCTTAAT-GATGATCACATGTCTTTGTATCT-GTCCGTTGCAAATAG 253
Query 210 TAAATCATTGAGAACTGGATGGAAAAGAAAAGTTAG-TCCTTGCTTCGTTT-TGTTGAAT 267
|||||| ||| ||| |||||||||| | | | || | || |||| | | || |||||
Sbjct 254 TAAATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATT-TTACTTC-TCTGTGCTGAAT 311
Query 268 CAGTCCGGCAAAGAGCTCCAAATATTAAGTACATCTGAAGAAGAAGGCAG-CTTGTTCTG 326
| || | |||||| ||| | | || || || | | ||||| | | || ||| ||
Sbjct 312 GAATCTGACAAAGAACTCTACAGATCAACTAT-TA-GCC-AAGAATTCTGTCT-GTTTTG 367
Query 327 TGATAAGG-TCCCATCCTGGGGTTATCAC-AAAGTATT-GCCTCTTAGCAAGCTTACAG- 382
| | ||| || | |||||||| ||| | |||| || ||||||||||||| || ||
Sbjct 368 CGTTCAGGCTCT-AGCCTGGGGT-ATC-CGAAAGGCTTTGCCTCTTAGCAAGTTTG-AGG 423
Query 383 AAGAAGAGTTTTTAGAGAATGACAAATTGATCATTAAAGT 422
|| ||| |||||| ||||| |||||| | ||| || ||||
Sbjct 424 AAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5