BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346083

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42730.1 | Symbols:  | F-box family protein | chr2:17787454-...  75.0    4e-13


> AT2G42730.1 | Symbols:  | F-box family protein | chr2:17787454-17791582 
REVERSE LENGTH=2407
Length=2407

 Score = 75.0 bits (40),  Expect = 4e-13
 Identities = 50/55 (91%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  1     ATGCAGAAGCAGGAGTTCTTGGAGTTGTTCAAGGCTGCACAACGAGCGGCTAAGT  55
             |||||||||||||||||||||||||||| | |||| ||||  |||||||||||||
Sbjct  1664  ATGCAGAAGCAGGAGTTCTTGGAGTTGTACGAGGCAGCACTTCGAGCGGCTAAGT  1718



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5