BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346095
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42850.1 | Symbols: CYP718 | cytochrome P450, family 718 | c... 2333 0.0
> AT2G42850.1 | Symbols: CYP718 | cytochrome P450, family 718 |
chr2:17831655-17833432 FORWARD LENGTH=1588
Length=1588
Score = 2333 bits (1263), Expect = 0.0
Identities = 1393/1458 (96%), Gaps = 0/1458 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTAGAACCAAACTTCGTTCTCTCATGGGTTTTCTTATGCATAGCTGCAACAATC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 8 ATGGTTTTAGAACCAAACTTCGTTCTCTCATGGGTCTTCTTATGCATAGCTGCAACAATC 67
Query 61 TCCAGCACACTTTTCTTCTTTCGCAAGAAACCTCACCGATTCATAACAAAGAAGATTCAG 120
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 68 TCCAGCACACTTTTCTTCTTCCGCAAGAAACATCACCGATTCATAACAAAGAAGATTCAG 127
Query 121 AAGATAAAGAAGCTTCCTCCTGGAGAAATGGGGCTTCCATGGATTGGTGAAACAATGGAG 180
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 AAGAAAAAGAAGCTTCTTCCTGGAGAAATGGGGCTTCCATGGATTGGTGAAACAATGGAT 187
Query 181 TTCTACAAAGCTCAGAAAAGCAACAGAGTGTTTGAGGATTTTGTAAATCCAAGGATCATC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 188 TTCTACAAAGCTCAGAAAAGCAACAGAGTTTTTGAGGATTTTGTAAATCCAAGGATCATC 247
Query 241 AAACACGGGAACATCTTCAAGACAAGAATCATGGGATCACCAACAATAGTAGTCAATGGA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AAACATGGGAACATCTTCAAGACAAGAATCATGGGATCACCAACAATAGTAGTCAATGGA 307
Query 301 GCTGAAGCCAATAGACTTATATTGTCCAATGAGTTTGGCTTGGTGGTGAGCTCATGGCCT 360
|||||||||||||| || ||||| ||||| |||||| |||||||||||||||| ||||||
Sbjct 308 GCTGAAGCCAATAGGCTCATATTATCCAACGAGTTTAGCTTGGTGGTGAGCTCGTGGCCT 367
Query 361 TCATCTTCTGTTCAGCTAATGGGCATGAACTGCATCATGGCTAAACAAGGCGAGAAGCAT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCATCTTCTGTTCAACTAATGGGCATGAACTGCATCATGGCTAAACAAGGCGAGAAGCAT 427
Query 421 CGGGTCCTTAGAGGGATTGCAGCTAATAGTCTTAGCTACAATGGGTTAGAGTCCTTAGTA 480
|||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 428 CGGGTCCTCAGAGGGATTGTAGCTAATAGTCTTAGCTACATTGGGTTAGAGTCCTTAATA 487
Query 481 CCTAAGCTATGTGACACTGTTAAGTTTCATCTTGAAACCGAATGGCAAGGCAATGAAGAG 540
|||||||| ||||| || ||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 488 CCTAAGCTCTGTGATACCGTTAAGTTTCATCATGAAACCGAATGGCGAGGCAAGGAAGAG 547
Query 541 ATTAGTCTCCACCGTTCGGCAAAAGTTCTCACTTTTACTGTAGTCTTTGAGTGTTTGTAT 600
||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 548 ATTAGCCTCTACCGTTCGGCAAAAGTTCTCACTTTCACTGTAGTATTTGAGTGTTTGTAT 607
Query 601 GGGATAAAAGTGGAGATTGGGATGTTAGGGGTCTTTGAGAGGGTTTTAGAAGGAGTTTTC 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 608 GGGATAAAAGTGGAGATTGGGATGTTAGAGGTCTTTGAGAGGGTTTTAGAAGGTGTTTTC 667
Query 661 GCTTTGCCTGTTGAGTTTCCTTGTTCTAAGTTTGCTAGAGCGAAGAAAGCAAGGCTAGAG 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 GCTTTGCCGGTTGAGTTTCCTTGTTCTAAGTTTGCTAGAGCAAAGAAAGCAAGGCTAGAG 727
Query 721 ATAGAGACATTTCTGGTTGGGAAGGTTAGGGAGAAGAGAAAAGAAATGGAAGAGGAGGGC 780
|||||||||||||| ||||||||||| ||||||||| ||| |||||||||| | |||||
Sbjct 728 ATAGAGACATTTCTAGTTGGGAAGGTCAGGGAGAAGCGAAGAGAAATGGAAAAAGAGGGA 787
Query 781 GCTGAGAAGCCAAGCACAACGCTTTTCTCGAGGCTAGTAGAAGAGTTGATCAAAGGCGTG 840
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 788 GCTGAGAAGCCAAACACAACGCTTTTCTCGAGGCTAGTAGAAGAGTTGATCAAAGGTGTG 847
Query 841 ATAACCGAAGAAGAGGTTGTAGATAATATGGTTTTGCTAGTGTTTGCAGCTCATGACACA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ATAACCGAAGAAGAGGTTGTAGATAATATGGTTTTGCTAGTGTTTGCAGCTCATGACACA 907
Query 901 ACCTCTTACGCCATGGCCATGACTTTCAAGATGTTAGCTCAGCACCCAACTTGCCGTGAC 960
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 908 ACCTCTTACGCCATGTCCATGACTTTCAAGATGTTAGCTCAGCACCCAACTTGTCGTGAC 967
Query 961 ACTCTCCTTCAAGAACATGCTCAAATAAAAGCAAACAAAGGGGAAGGAGAATATCTTTCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 968 ACTCTCCTTCAAGAACATGCTCAAATAAAAGCAAACAAAGGGGAAGGAGAATATCTTACA 1027
Query 1021 GTGGAAGATGTGAAAAAGATGAAGTATAGTTGGCAAGTTGTTCGTGAAACAATGCGATTA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GTGGAAGATGTGAAAAAGATGAAGTATAGTTGGCAAGTTGTTCGTGAAACAATGCGATTA 1087
Query 1081 TCCCCTCCAATCTTCGGTTCTTTCAGAAAAGCAGTTGCTGACATTGACTATGGAGGTTTC 1140
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1088 TCCCCTCCAATCTTCGGTTCTTTCAGAAAAGCAGTGGCTGATATTGACTATGGAGGATAC 1147
Query 1141 ACAATCCCCAAAGGCTGGAAGATACTTTGGACAACTTACGGAACTCATTACAATCCTGAA 1200
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1148 ACAATCCCCAAAGGCTGGAAGATACTCTGGACCACTTATGGAACTCATTATAATCCTGAA 1207
Query 1201 ATATTTCAAGATCCAATGAGTTTTGATCCAACAAGATTTGATAAGCCAATACAGGCATAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 ATATTTCAAGATCCAATGAGTTTTGATCCAACAAGATTTGATAAGCCAATACAGGCATAT 1267
Query 1261 ACTTATCTACCATTTGGAGGTGGACCAAGGCTTTGTGCAGGTCACCAACTAGCAAAAATC 1320
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1268 ACATATCTACCATTTGGAGGTGGACCAAGGCTTTGTGCAGGTCACCAACTAGCCAAAATC 1327
Query 1321 AGCATTCTCGTTTTCTTGCACTTCGTTGTGACCGGTTTCGATTGGTCCTTAGTCTACCCA 1380
||||||||||||||| |||| || |||||||| ||||| || ||||||||||||||||||
Sbjct 1328 AGCATTCTCGTTTTCATGCATTTTGTTGTGACAGGTTTTGACTGGTCCTTAGTCTACCCA 1387
Query 1381 GATGAGACAATCAGCATGGATCCTCTTCCATTTCCGTCTCTTGGAATGCCAATCAAAATC 1440
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1388 GATGAGACAATTAGCATGGATCCTCTCCCATTTCCGTCCCTTGGAATGCCAATCAAAATT 1447
Query 1441 TCTCCCAAGGTGTCATAG 1458
||||||||||||||||||
Sbjct 1448 TCTCCCAAGGTGTCATAG 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5