BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346167
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70250.1 | Symbols: | receptor serine/threonine kinase, put... 383 2e-105
> AT1G70250.1 | Symbols: | receptor serine/threonine kinase, putative
| chr1:26452965-26456088 FORWARD LENGTH=2410
Length=2410
Score = 383 bits (207), Expect = 2e-105
Identities = 559/722 (77%), Gaps = 52/722 (7%)
Strand=Plus/Plus
Query 63 GTCGAGGAACTTTACGATAGAGAACAAATGCGAATACACTATATGGCCTGCATCCTACAC 122
||| |||| |||||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct 439 GTCAAGGAGCTTTACGATAGAAAACAAATGCCAATACACCATATGGCCTGCAACCTACGG 498
Query 123 CTACCAGG-GATCGCTCGAAACAAACGCTTTCCG-TCTGGACAAAGGACAGACGCGTACC 180
||| ||| |||| || ||||||| || ||| | ||| || |||||| |||||||||||
Sbjct 499 CTA-TAGGAGATCACTAGAAACAACCGGTTT-TGTTCTTGAGAAAGGAGAGACGCGTACC 556
Query 181 GTCCAAGCGACGTCGTCGTGGATAGGTCAATTCTGGGGTAGGACGTTGTGCACGACCAAC 240
|| ||||| |||| || |||||||||| |||||||||||||| | ||| | ||||||
Sbjct 557 ATCAAAGCGCCGTCATCATGGATAGGTCGTTTCTGGGGTAGGACACTCTGCTCCACCAAC 616
Query 241 TCATCAGGGGGTTTCTCATGCATCACTGGAGACTGTAACTCCGGCGAACTTGAGTG-CTC 299
||| |||||||||||||||| ||| |||||||| | |||||| || | |||| |||
Sbjct 617 TCAACAGGGGGTTTCTCATGTGCCACGGGAGACTGCACCTCCGGAAAAATCAAGTGCCTC 676
Query 300 TG-ATCGCGTTGTAAACACGACAATTATGGCAACTTTAGCCGAGTTTAATCTCGCTGCGA 358
| ||| | || | | | | | |||| | | ||||||||| | || ||
Sbjct 677 GGTATC-C-CCATAGA-TC--C-A--A---CAACAGTGGTCGAGTTTAA---C-CT-CG- 719
Query 359 CTCCTGAGGATGGTGTAGACTATTACGACGTCAGCGTCATCAATGGTTACAACCTCCCTT 418
|| || | ||||| |||||||| | ||||| |||| |||||||||||||||||||||
Sbjct 720 CTTCT---TACGGTGTCGACTATTATGTCGTCAACGTCTTCAATGGTTACAACCTCCCTT 776
Query 419 TGCTTGTAACCCCCGAGAACGAAAAGTGC-GAAAGCATCGGATGCATTGTTGACTTGAAC 477
||||||| |||||||||||| |||| ||| ||| |||| | |||| || ||||| |||||
Sbjct 777 TGCTTGTGACCCCCGAGAACAAAAACTGCAGAA-GCATTGAATGCGTTATTGACATGAAC 835
Query 478 -AGGACGTGTCCATCGGAGCTGA-GGTTGAGCAATAGCGACACC-GGATCGAACGATCCA 534
|| || ||||| |||||||| | ||| || || ||| | | | |||||| || |||||
Sbjct 836 GAG-ACATGTCCCTCGGAGCTAATGGT-GAACAGTAGTGGC-CTTGGATCGCACCATCCA 892
Query 535 TTTGCCTGCAGGACCTCGTGTCAGCAAA-AC-ATGTCGGCAGAGATTTGCTGTGTTGGAA 592
| ||||||| |||| | |||||| | | || | || | ||||| |||||||| | |||
Sbjct 893 ATAGCCTGCATGACCACTTGTCAG-AGATACCA-GTTGCCAGAGCTTTGCTGTATCGGAC 950
Query 593 ACTACGTTGCAGAGGACAATG-TCGTAGGACCGG-AAGAATGCAAGCGGACGAAT-TACT 649
|| | || | | || || ||||| ||||| || | ||||||||||||| | ||||
Sbjct 951 TCT-C-TT-CTGGGG----TGGTCGTACCACCGGGAATA-TGCAAGCGGACGA-TCTACT 1001
Query 650 CGCAGACTTTCAACAACGTGTGCCCACGCGCTTATAGCTACGCCTACGACACTAATAGTA 709
||| ||| ||||| |||||||||||| |||||||||| |||||||||||| | ||| |
Sbjct 1002 CGCGGACATTCAATAACGTGTGCCCAAGCGCTTATAGTTACGCCTACGACGTTGATAACA 1061
Query 710 GCACTTTCACATGTC-AGTACTCCTCCAACTTTGTCATCACGTTTTGCCCGTCTAGCACA 768
||| |||||| |||| | ||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1062 GCAGTTTCACTTGTCCAA-ACTTCTCCAACTTTGTCATCACGTTTTGTCCGTCTAGCTCA 1120
Query 769 AC 770
||
Sbjct 1121 AC 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5