BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346169
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43570.1 | Symbols: CHI | chitinase, putative | chr2:1807622... 632 1e-180
> AT2G43570.1 | Symbols: CHI | chitinase, putative | chr2:18076224-18077463
REVERSE LENGTH=1027
Length=1027
Score = 632 bits (342), Expect = 1e-180
Identities = 684/839 (82%), Gaps = 64/839 (8%)
Strand=Plus/Plus
Query 46 CTTTTGC-TCACAACTCTCCTTGTCTTGATCCTGACCGTTTCCAAACCAGTAACTTCCCA 104
||||| | ||| ||| || || || ||||||| |||||||||||||| || | || ||
Sbjct 65 CTTTT-CTTCATAACCCTAATTTTCCTGATCCTAACCGTTTCCAAACCGGTCGCCTCTCA 123
Query 105 AAACTGTGGCTGTGCCTCTGACTTCTGCTGCAGCCAATGGGGTTACTGTGGTCA-GACAG 163
|||||||||||| |||||||||||||| |||||| ||| || ||||||||| | ||| |
Sbjct 124 AAACTGTGGCTGCGCCTCTGACTTCTGTTGCAGCAAATATGGCTACTGTGGT-ACGACCG 182
Query 164 ATGA-TTACTGCGGCGAAGGCTGCCGTGAGGGCCCTTGTCAACGTAGTAGTGAGACCAGC 222
|||| || || || | | | ||||| | || | | | | | | ||||
Sbjct 183 ATGAGTT-CT---GC----G--G-C--GAGGG--C-TG-CCA-G--GCA--G-GACC--T 217
Query 223 GGCGGCGAAAACAGTGGCGGCGGCGGAGA---TGCTGTTTCGCTTGAAGGAACGGTGACA 279
|| || | |||||| ||||| ||||| ||||||||| || |||||||||||||||
Sbjct 218 TGC--CG-GAGCAGTGGAGGCGGTGGAGATCCTGCTGTTTCACTAGAAGGAACGGTGACA 274
Query 280 CCTGAGTTCTTTAACTCTATATTAAACCAAGCAAGAGGTGATTGTGCAGGTAAAGGATTC 339
||||| ||||||||||||||| |||||| | ||||||||||||| | || |||||||||
Sbjct 275 CCTGACTTCTTTAACTCTATACTAAACC-A--AAGAGGTGATTGTCCTGGCAAAGGATTC 331
Query 340 TACTCTCACAATGCCTTTATGGCCGCAGCTAATTCGTACCAGAGCTTCGGTGCTTCCATC 399
||| ||||| | |||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 332 TACACTCACGACACCTTCATGGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCCATC 391
Query 400 TCCAAACGCGAGATCGCTGCGTTCTTCGCTCACGTCA-CCCATGAAACAGAATTCATGTG 458
||||||||||| ||||| ||||| ||||||||||| | |||| ||||||| ||||||||
Sbjct 392 TCCAAACGCGAAATCGCGGCGTTTTTCGCTCACGT-AGCCCAAGAAACAGGGTTCATGTG 450
Query 459 CTACATCGAGGAAATTGATGGACCAGCCAAAGCCG-A----GA-ACTACTGTGAGA-A-A 510
||||| ||||||||||||||||||||||| |||| | || | ||||| || | | |
Sbjct 451 TTACATTGAGGAAATTGATGGACCAGCCAAGGCCGCATCCGGAGAGTACTGCGACACAGA 510
Query 511 GACAACACAGATTTCCCATGTGCACAAGGAAAGGCCTATTATGGCCGTGGTCCAATCCAG 570
|| ||| |||| |||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 511 GA-AAC-CAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGCCGTGGTGCAATCCAG 568
Query 571 CTCTCTTGGAACTACAACTACGGTCTTTGTGGCAGAGACCT-GAACGAGAACTTATTGGC 629
|||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||||
Sbjct 569 CTCTCTTGGAACTACAACTACGGTCTCTGTGGCAAAG-CCTTGGACGAGAACTTATTGGC 627
Query 630 CTCACCAGAGAAAGTGGCTCAAGATCCAG-TTCTTGCCTTCAAGACTGCTTTCTGGTTCT 688
|||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 628 TTCACCAGAGAAAGTTGCTCAAGA-CCAGGTTCTTGCCTTCAAGACCGCTTTCTGGTTCT 686
Query 689 GGACCACTAATGTTCGTGGGAAATTTAA-TCAGGGTTTTGGCGCGACGATCAGAGCTA-T 746
|||||||||||||||| || ||||| || ||| |||||||| || ||||| || | |
Sbjct 687 GGACCACTAATGTTCGCACGAGTTTTAAATC-GGGCTTTGGCGCAACAATCAGGGC-AGT 744
Query 747 AAATGGTATGGAGTGTAGCGGAAGAGATCCT---GC-AACTGTCGCCAAAAGGATTGAGT 802
||| ||| ||||||||||||| ||||| || || || | |||||| |||||| |||
Sbjct 745 GAATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAA-GCCGCCAACAGGATTAAGT 803
Query 803 ATTACCGAGACTATTGTGGCAAACTTGGGGTCGAACCTGGCGACAACCTCTCTTGTTAA 861
||| || ||||||||||||||| ||||| || | |||||| || |||||| ||||||||
Sbjct 804 ATTTCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCTGGAGATAACCTCACTTGTTAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5