BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346189

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43745.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   649    0.0  
  AT2G43740.1 | Symbols:  | Mannose-binding lectin superfamily pr...  78.7    5e-14
  AT2G43730.1 | Symbols:  | Mannose-binding lectin superfamily pr...  69.4    3e-11


> AT2G43745.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Mannose-binding lectin superfamily protein (TAIR:AT2G43730.1); 
Has 10 Blast hits to 10 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr2:18128529-18129841 REVERSE LENGTH=1227
Length=1227

 Score =  649 bits (351),  Expect = 0.0
 Identities = 462/512 (90%), Gaps = 21/512 (4%)
 Strand=Plus/Plus

Query  1     ATGATAAGAGCAGGATCAGTGGGAAAAATATCG-CATTGTGAGTATACTTATTGGGACGG  59
             |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||  
Sbjct  625   ATGATAAGAGCAGGATCAGTGGGAAAAAAATCGACA-TGTGAGTATACTTATTGGGAC--  681

Query  60    GTCTGATGCTCCTGGAGAAGAGGTGATGGGTGACGATAGTTGGGATGACAAGGGACGCAC  119
             | | | || |  |||||||||||||||||||||||||||||||||| || |||||||   
Sbjct  682   GAC-GGTG-T--TGGAGAAGAGGTGATGGGTGACGATAGTTGGGATTACGAGGGACG---  734

Query  120   CAAGATCTCTCACATATACGTTGCTTTCGACGAAGTCATAATGTCTATTCAGTTTGGTTT  179
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  735   CAAGATCTCTCACATATATGTTGCTTTCGACGAAGTCATAATGTCTATTCAGTTTGGTTT  794

Query  180   TTTGGAGAATGGAGCTCTAGTCCTGTCTGAAA-AGTATGGTGCC-TTCGAGGAGGGATCC  237
             |||||||||||||||||||||||||||| ||| || |||||| | || |||||||| |||
Sbjct  795   TTTGGAGAATGGAGCTCTAGTCCTGTCT-AAACAGCATGGTGGCATT-GAGGAGGGCTCC  852

Query  238   AACTTTCGTGTTTTGAGACTGAATCAAGACGAATATGTAACTGGATTGAGTGGAGTACTA  297
             |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  853   AACTTTCGTGTTTTGAGACTGAATCAAGACGAATATGTAACTTGATTAAGTGGAGTACTA  912

Query  298   -GAAAAGGATGGCAGAGGAATCAGAAATTTGACACTTCGCACTAACCTTGGGGAGTATAT  356
              |||| | ||||  |||| ||||||||||||||| ||||||||||| | |||||||||||
Sbjct  913   AGAAA-GCATGGTGGAGGGATCAGAAATTTGACATTTCGCACTAACGTCGGGGAGTATAT  971

Query  357   GATTGGACGTTCAAGCGACAATTATCCAAGTGATTCCACA-ATAGATATTGATCCGGCAA  415
             ||||||||||||||||||||||||||||| | |||  | | |||||||||||||||||||
Sbjct  972   GATTGGACGTTCAAGCGACAATTATCCAAATCATTGGA-AGATAGATATTGATCCGGCAA  1030

Query  416   TATGTGATCGC-CGTGAGTTTGGTGGTTTCTTTGGGTCTTACGATAGATACCGTCTGACA  474
             |||||||| |  ||||||||||||||||||||||||||| || ||  ||||| |||||||
Sbjct  1031  TATGTGAT-GAACGTGAGTTTGGTGGTTTCTTTGGGTCTAACAATTTATACCATCTGACA  1089

Query  475   TCGATTGGTATGTATTTGAGTCCCATTACAAG  506
             |||||||||||||||||||| |||||||||||
Sbjct  1090  TCGATTGGTATGTATTTGAGACCCATTACAAG  1121


> AT2G43740.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr2:18126578-18128293 REVERSE LENGTH=1589
Length=1589

 Score = 78.7 bits (42),  Expect = 5e-14
 Identities = 80/97 (82%), Gaps = 7/97 (7%)
 Strand=Plus/Plus

Query  415  ATATGTGATCGCCGTGAGTTTGGTGGTTTCTTTGGGTCTTACGATAGA-TA---C-CGTC  469
            ||| ||||||| ||||||||||||||||||||||||||||  |||| | ||   | | ||
Sbjct  893  ATACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATA-ACTATGGCAC-TC  950

Query  470  TGACATCGATTGGTATGTATTTGAGTCCCATTACAAG  506
            |||| || ||||| || ||| || |||||||||||||
Sbjct  951  TGACTTCCATTGGCATTTATGTGTGTCCCATTACAAG  987


> AT2G43730.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr2:18124648-18125868 REVERSE LENGTH=1047
Length=1047

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 75/92 (82%), Gaps = 8/92 (9%)
 Strand=Plus/Plus

Query  415  ATATGTGATCGCCGTGAGTTTGGTGGTTTCTTTGGGTCTTACGAT-A-GA-T---ACCGT  468
            ||| ||||||| ||||||||||||||||||||||||||||  ||| | || |   || ||
Sbjct  590  ATACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGT  649

Query  469  CTGACATCGATTGGTATGTAT-TTGAGTCCCA  499
            |||||||| ||||| || ||| || | |||||
Sbjct  650  CTGACATCCATTGGCATTTATGTTTA-TCCCA  680



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5