BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346222
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reduc... 1256 0.0
AT3G59970.3 | Symbols: MTHFR1 | methylenetetrahydrofolate reduc... 726 0.0
> AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reductase
2 | chr2:18262210-18265346 FORWARD LENGTH=2037
Length=2037
Score = 1256 bits (680), Expect = 0.0
Identities = 713/729 (98%), Gaps = 1/729 (0%)
Strand=Plus/Plus
Query 279 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 1116
Query 339 AACCAAGGGCTGGGAAGACTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCATA 398
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AACCAAGGGCTGGGAAGATTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCATA 1176
Query 399 TGGTGCACTCTCGGATCATCAGTTCTCACGTCCACGAGCACGTGACAAGAAGCTTCAACA 458
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1177 TGGTGCACTCTCGGATCATCAGTTCTCACGTCCGCGAGCACGTGACAAGAAGCTTCAACA 1236
Query 459 AGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTCTG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 AGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTCTG 1296
Query 519 CCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAAG 1356
Query 579 GATAATAAACGAGCAACTGGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAATAGCCA 638
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1357 GATAATAAACGAGCAACTGATAAAAGTCAACTCCAAAGGCTTCTTGACCATCAATAGCCA 1416
Query 639 ACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTGG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTGG 1476
Query 699 ATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAGT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAGT 1536
Query 759 GGTCGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGTCTGTGAACAAAGGAGAAAA 818
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1537 GGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAACA 1596
Query 819 CTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTTACTTGGGGAGTTTTCCCGGC 878
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1597 GTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTAACTTGGGGAGTTTTCCCGGC 1656
Query 879 TAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGATGA 938
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1657 TAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAACGTCTGGAAGGATGA 1716
Query 939 AGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCAAGAAGCTGACCCTTCCA- 997
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1717 AGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCCAGAAGCCGACCCTTCCAG 1776
Query 998 AGATTTGCT 1006
| | |||||
Sbjct 1777 AAACTTGCT 1785
Score = 178 bits (96), Expect = 1e-43
Identities = 152/176 (86%), Gaps = 16/176 (9%)
Strand=Plus/Plus
Query 119 CGAATGAAGCTGTGAAAGCCTATGGTCTTCACCTTGGGACAGAGATTTGTATAAATATG- 177
|||| ||||||||||||||||||||| |||||||||| |||||||| |||| ||| |||
Sbjct 856 CGAA-GAAGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATGTGTAAAAAGATGT 914
Query 178 T---TC----AG----GTCTCTTCATCTCTACACATTGAACATGGAGAACA-CAACTCTT 225
| || || ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 915 TGGCTCATGGAGTCAAGTCTCTTCATCTCTACACATTGAACATGGAGAA-ATCTGCTCTT 973
Query 226 GCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAAATTTCTCCTTCTTTAC 281
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 974 GCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAA-TTTCTCGTTCTTTAC 1028
> AT3G59970.3 | Symbols: MTHFR1 | methylenetetrahydrofolate reductase
1 | chr3:22151195-22154483 FORWARD LENGTH=2047
Length=2047
Score = 726 bits (393), Expect = 0.0
Identities = 616/724 (85%), Gaps = 14/724 (2%)
Strand=Plus/Plus
Query 279 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 338
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1074 TACTAAGGAAGATGTTCGCCCAATTTTCTGGGCAAACCGTCCAAAGAGCTACATATCTAG 1133
Query 339 AACCAAGGGCTGGGAA-GACTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCAT 397
||| ||||||| |||| ||||||||||| || || ||||||||||||| |||||| |||
Sbjct 1134 AACAAAGGGCT-GGAATGACTTCCCACATGGACGTTGGGGTGATTCACACAGTGCAGCAT 1192
Query 398 ATGGTGCACTCTCGGATCATCAGTTCT-CACGTCCACGAGCACGTGACAAGAAGCTTCAA 456
| || |||| |||||| ||||||| | | || ||| || ||||||||||||||||||
Sbjct 1193 ACAGTACACTTTCGGATTATCAGTT-TGCGCGCCCAAAAGGACGTGACAAGAAGCTTCAG 1251
Query 457 CAAGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTC 516
||||||||||| |||||||||||||| |||||||| |||| ||||||||||| ||||||
Sbjct 1252 CAAGAATGGGTCGTCCCACTGAAAAGCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTC 1311
Query 517 TGCCTTGGAAACCTT-AAAAGCAGTCCC-TGGTCTGAATTAGATGGACTCCAGCCAGAGA 574
||| ||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1312 TGCATTGGAAA-CTTAAAAAGCAG-CCCATGGTCTGAATTAGATGGACTCCAGCCAGAGA 1369
Query 575 CAAAGATAATAAACGAGCAACT-GGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAAT 633
||||||| ||||| |||||||| || ||||||||||||||| || ||| ||||||| |||
Sbjct 1370 CAAAGATCATAAATGAGCAACTCGG-AAAAATCAACTCCAACGGTTTCCTGACCATTAAT 1428
Query 634 AGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCT 693
||||||||||||||||| || | | ||| ||||| ||| || |||||||||| ||||||
Sbjct 1429 AGCCAACCATCAGTCAATGCAGCCAAATCCGATTCTCCAGCTATTGGATGGGGTGGTCCT 1488
Query 694 GTTGGATATGTATACCA-AAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGA 752
| ||| || || ||||| |||| ||||||| ||||||||||| |||||||| || |||||
Sbjct 1489 GGTGGTTACGTCTACCAGAAAG-CTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGA 1547
Query 753 TGCAGTGGTCGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGTCTGTGAACAAAGG 812
|| | || ||||||| ||||||||| || || || || |||||| | |||||||||
Sbjct 1548 CACACTTGTGGAGAAATCCAAAGCTTTTCCTTCTATCACCTACATGGCCGTGAACAAATC 1607
Query 813 AGAAAACTGGGTATCGAACACTGCCCAAG-CTGATGTGAATGCTGTTACTTGGGGAGTTT 871
||| || |||||||| ||||| | | | | ||||||||||| |||||||||||||| |
Sbjct 1608 AGAGAATTGGGTATCAAACACCGGTGA-GTCCGATGTGAATGCAGTTACTTGGGGAGTGT 1666
Query 872 TCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGA 931
|||| |||||||| | |||||||| || || || ||||| || || |||||||||||||
Sbjct 1667 TCCCAGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGA 1726
Query 932 AGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCAAGAAGCTGACC 991
| || ||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1727 AAGACGAAGCGTTTGAGATTTGGTCAAGAAGCTGGGCTAACTTGTACCCAGAAGATGACC 1786
Query 992 CTTC 995
||||
Sbjct 1787 CTTC 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5