BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346227
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44180.1 | Symbols: MAP2A | methionine aminopeptidase 2A | c... 1742 0.0
AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B | c... 1216 0.0
> AT2G44180.1 | Symbols: MAP2A | methionine aminopeptidase 2A |
chr2:18269243-18271860 REVERSE LENGTH=1600
Length=1600
Score = 1742 bits (943), Expect = 0.0
Identities = 1057/1113 (95%), Gaps = 4/1113 (0%)
Strand=Plus/Plus
Query 255 GAAGAAGAAGAATTC-CATTCAACAGACTGATCCACCTTCAATTCCTGTTCTTGACCTCT 313
||||||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 291 GAAGAAGAAGAGTTCTC-TTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 349
Query 314 TTCCTTCTGGAGAATTTCCTCAAGGTGAAATCCAACAATACAAGGATGATAATTTGTGGA 373
| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 350 TCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGA 409
Query 374 GAACAACATCCGAAGAGAAGAGAGAGATGGAGAGGCTTCAAAAGCCGATATATAACTCTC 433
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 GAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTC 469
Query 434 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCATATTGAAAC 493
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 470 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGC 529
Query 494 CTGGAATGTTGATGATTGATCTCTGTGAGACCTTAGAGAACACTGTTTGTAAGTTGATAT 553
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 530 CTGGAATGTTGATGATTGATCTCTGTGAGACTTTAGAGAACACTGTTCGTAAGTTGATAT 589
Query 554 CAGAGAATGGTCTTCAAGCTGGTATCGCATTTCCTACAGGGTGTTCTCTGAATAACGTTG 613
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct 590 CAGAGAATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCACTGAATAATGTTG 649
Query 614 CTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTCATGA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 CTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGA 709
Query 674 AGTTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCCGCTTTCACAGTTGCCT 733
|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 710 AGCTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCTGCTTTTACAGTTGCGT 769
Query 734 TCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCACGTGAAGCAACATATACCGGTATCA 793
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 770 TCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCGCGTGACGCAACATATACTGGTATCA 829
Query 794 AGGAAGCTGGGGTAGATGTCCGTCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCATGG 853
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 830 AGGAAGCCGGGGTAGATGTCCGGCTCTGTGATGTTGGTGCTGCAGTTCAGGAGGTCATGG 889
Query 854 AGTCTTATGAGGTTAAAATCAATGGAAAAGGCTACCAAGTCAAAAGTATCAGAAACCTGA 913
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 890 AGTCTTATGAGGTTGAAATCAATGGAAAAGTCTACCAAGTCAAAAGTATCAGAAACCTGA 949
Query 914 ATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCTGTTCCTAATGTTAGAG 973
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 950 ATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCAGTTCCTAATGTTAGAG 1009
Query 974 GAGGCGAGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GAGGCGAGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAA 1069
Query 1034 CCGGGAAAGGATATGTGAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACTACGATG 1093
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1070 CAGGGAAAGGATATGTAAGAGAAGACTTAGAATGTAGCCATTACATGAAAAACTATGATG 1129
Query 1094 TGGGACACGTCCCTTTGAGGTTACCAAAAGCAAAACAACTCCTTGCCACCATTAACAAGA 1153
|||| || || |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1130 TGGGTCATGTACCTTTGAGGTTACCAAGGGCAAAACAACTCCTTGCCACTATTAACAAGA 1189
Query 1154 ACTTCTCCACTCTAGCTTTCTGCGGACGCTATTTGGACCGCCTTGGTGAAACGAAATACT 1213
|||||||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1190 ACTTCTCCACGCTAGCCTTCTGCAGACGTTATTTGGACCGCCTTGGTGAAACAAAATACT 1249
Query 1214 TGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATG-CCGTCCAGTGTGT 1272
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1250 TGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCC-TCCAGTGTGT 1308
Query 1273 GATGTAAAAGGAAGCTATGTTTCTCAGTTTGAGCATACGATTTTGTTGCGGCCAACTTGC 1332
||||| |||||||||||| ||||||||||||||||||| || ||||||| |||||||||
Sbjct 1309 GATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTGC 1368
Query 1333 AAAGAGATTATTTCCAAAGGAGACGATTATTGA 1365
|||||||||||||||||||||||||||||||||
Sbjct 1369 AAAGAGATTATTTCCAAAGGAGACGATTATTGA 1401
> AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B |
chr3:22155719-22158730 REVERSE LENGTH=1621
Length=1621
Score = 1216 bits (658), Expect = 0.0
Identities = 971/1122 (87%), Gaps = 22/1122 (2%)
Strand=Plus/Plus
Query 255 GAAGAAGAA-GAATTCCATTCAACAGACTGATCCACCTTCAATTCCTGTTC-TTGACCTC 312
||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||| |||
Sbjct 309 GAAGAAGAAGGAACTCC-CTCAACAGACTGATCCACCTTCAATTCCTG-TCGTTGAGCTC 366
Query 313 TTTCCTTCTGGAGAATTTCCTCAAGGTGAAATCCAACAATACAAGGATGATAAT-TTGTG 371
|| || || ||||| |||||| |||||||||||||| | || |||||||||||| || ||
Sbjct 367 TTCCCATCAGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGATAATCTT-TG 425
Query 372 GAGAACAACATCCGAAGAGAAGAGAGAGATGGAGAGGCTTCAAAAGCCGATATATAACTC 431
|||||||||||| ||||||||||||||| ||||| | || ||||||| |||||||||||
Sbjct 426 GAGAACAACATCTGAAGAGAAGAGAGAGCTGGAGCGTTTTGAAAAGCCAATATATAACTC 485
Query 432 TCTTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCATATTGAA 491
| |||||| ||| || ||||||||||| || ||| | || ||| | ||||||||| ||||
Sbjct 486 TGTTCGCCGAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGCATAGTGAA 545
Query 492 ACCTGGAATGTTGATGATTGATCTCTGTGAGACCTTAGAGAACACTGTTTGTAAGTTGAT 551
|||||||||||||||| |||| | ||||||||| ||||||| |||||| ||||||||||
Sbjct 546 GCCTGGAATGTTGATGACTGATATATGTGAGACCCTAGAGAATACTGTTCGTAAGTTGAT 605
Query 552 ATCAGAGAATGGTCTTCAAGCTGGTATCGCATTTCCTACAGGGTGTTCTCTGAATAACGT 611
||||||||||||||||||||||||||| ||||| |||||||| || ||| ||||| ||
Sbjct 606 ATCAGAGAATGGTCTTCAAGCTGGTATTGCATTCCCTACAGGATGCTCTTTGAATTGGGT 665
Query 612 TGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTCAT 671
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 666 CGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTACTTCAGTACGACGATGTTAT 725
Query 672 GAAGTTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCCGC-TTTCACAGTTG 730
||| ||||| ||||||||||||||||||||||| ||| |||| | || ||| |||||||
Sbjct 726 GAAATTGGACTTTGGAACACATATTGATGGGCATATTATTGACTGTGCATTT-ACAGTTG 784
Query 731 CCTTCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCACGTGAAGCAACATATACCGGTA 790
||||||| |||||||| |||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 785 CCTTCAACCCTATGTTCGATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGTATACCGGTA 844
Query 791 TCAAGGAAGCTGGGGTAGATGTCCGTCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCA 850
|||||||||||||| | |||||||||||||||||| | |||||||| |||||||||||||
Sbjct 845 TCAAGGAAGCTGGGATCGATGTCCGTCTCTGTGATATCGGTGCTGCTATTCAGGAGGTCA 904
Query 851 TGGAGTCTTATGAGGTTAAAATCAATGGAAAAGG-CTACCAAGTCAAAAGTATCAGAAAC 909
||||||||||||||||| ||||||| ||||| || || |||||| ||||||||| |||||
Sbjct 905 TGGAGTCTTATGAGGTTGAAATCAACGGAAA-GGTCTTCCAAGTTAAAAGTATCCGAAAC 963
Query 910 CTGAATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCTGTTCCTAAT-GT 968
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||| | ||
Sbjct 964 TTGAATGGTCACAGCATTGGACCCTATCAGATACATGCTGGGAAATCTGTTCCTA-TCGT 1022
Query 969 TAGAGGAGGCGAGCAGACGAAA-ATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTG 1027
| ||||||||||||||| ||| ||||||||||| || || |||||||| ||||| ||||
Sbjct 1023 AAAAGGAGGCGAGCAGAC-AAAGATGGAAGAGGGCGAGTTTTATGCCATCGAAACATTTG 1081
Query 1028 GATCAACCGGGAAAGGATATGTGAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACT 1087
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 1082 GATCAACCGGGAAAGGATATGTGAGAGAAGACCTAGAATGTAGCCATTACATGAAGAACT 1141
Query 1088 ACGATG-TGGGACACGTCCCTTTGAGGTTACCAAAAGCAAAACAACTCCTTGCCACCATT 1146
|| | ||| |||||||| |||||||| || | |||||||||||||||||| ||||||
Sbjct 1142 TTGACGCTGGC-CACGTCCCCTTGAGGTTGCCTAGAGCAAAACAACTCCTTGCAACCATT 1200
Query 1147 AACAAGAACTTCTCCACTCTAGCTTTCTGCGGACGCTATTTGGACCGCCTTGGTGAAACG 1206
|||||||| ||||| ||||| || |||||| |||| |||||||||||| ||||||||||
Sbjct 1201 AACAAGAATTTCTCGACTCTCGCCTTCTGCAGACGTTATTTGGACCGCATTGGTGAAACC 1260
Query 1207 AAATACTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCC--ATGCCGTC 1264
|||||||| |||||| |||||||||||||||| |||||||| || |||| || || ||
Sbjct 1261 AAATACTTAATGGCTCTAAAGAATCTTTGTGACTCTGGCATTGTTCAGCCGTAT-CC-TC 1318
Query 1265 CAGTGTGTGATGTAAAAGGAAGCTATGTTTCTCAGTTTGAGCATACGATTTTGTTGCGGC 1324
| |||||||||| |||||||||||||| || |||||||| || || ||||| |||| |
Sbjct 1319 CTCTGTGTGATGTGAAAGGAAGCTATGTATCACAGTTTGAACACACCATTTTACTGCGAC 1378
Query 1325 CAACTTGCAAAGA-GATTATTTCCAAAGGAGACGATTATTGA 1365
| ||||||||||| | || | ||||| |||||||| || |||
Sbjct 1379 CTACTTGCAAAGAAG-TTCTCTCCAAGGGAGACGACTACTGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5