BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346243

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61010.1 | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo...   457    5e-128


> AT5G61010.1 | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo70 
family protein E2 | chr5:24553898-24556749 FORWARD LENGTH=2852
Length=2852

 Score =  457 bits (247),  Expect = 5e-128
 Identities = 291/312 (93%), Gaps = 4/312 (1%)
 Strand=Plus/Plus

Query  1     ATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGAGA-GAAAAATCATGTCTTTGAGGC  59
             |||||||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct  715   ATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGA-ATGAACAATCATGTCTTTGAGGC  773

Query  60    ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAATAACCTGGACGCCAATTTGAG  119
             ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  774   ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAACAACCTGGATGCCAATTTGAG  833

Query  120   AAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACATTTGGGATTGCTGATACGAAAG  178
             |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct  834   AAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACATTTGGGATTGCTGATACCAAAG  892

Query  179   TGGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCAAAGAAGCTATGAAGAGAATCC  238
             | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  893   TTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCAAAGAAGCTGTGAAGAGAATCC  952

Query  239   GGAGTTGGGAGACAAGCCAGTCGACGGTGTTGGACGCTGGTCTGTCTGAAGCAAATCAAT  298
             | ||||||||||||| |||||||||| |||| || |||||||||||||||||  |||| |
Sbjct  953   GCAGTTGGGAGACAAACCAGTCGACGATGTTTGAAGCTGGTCTGTCTGAAGCTGATCAGT  1012

Query  299   TCTTTCAAGCCC  310
             ||||||||||||
Sbjct  1013  TCTTTCAAGCCC  1024



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5