BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346283
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44735.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 678 0.0
> AT2G44735.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT3G18720.1); Has 82 Blast
hits to 82 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:18438623-18441641
FORWARD LENGTH=1104
Length=1104
Score = 678 bits (367), Expect = 0.0
Identities = 430/458 (94%), Gaps = 13/458 (3%)
Strand=Plus/Plus
Query 246 AAAAAGCGGGCCCTTTTATGCTAGTACACTTCTTCTTAACCCGTTTACCCGTGAGAGCTT 305
|||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 294 AAAAAGCGAGTCCTATTATGCTAGTACACTTGTTCTTAACCCGTTTACCCGTGAGAGCTT 353
Query 306 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 413
Query 366 TACATCACCTAGCTGTATGGTCATCTCCTACATCCAACTACGATCCTGCGGATCTGTTGT 425
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 414 TACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTACGATCCTGCGGATCTGTTTT 473
Query 426 CATCGATACTTGGCGGCCTGGTGAAACCGAGTGGACTACACACTGCTTTGAGAACCAGTT 485
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 474 GATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAACCAGTT 533
Query 486 ACCCTTTCGCTATTGGCCCAAATGTGTCTTCTCCAATGGCATGTTCTACTGTCTCAGTGA 545
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 ACCCTTTCGCTATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCTCAGTGA 593
Query 546 ATGCGGCTATCTTGGGGTTTTCGACCCCTCTTCTAAAGCAGCAACATGGAATATTCTTCC 605
||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 594 ATGCGGCTATCTTGGGGTTTTCGACCCCTCT---AAAGCA--A-CGTGGAATATTCTTCC 647
Query 606 AGTGAAACCATGTCCGGCCTTTGATCAGT---A-T--GATTACTCTCATAGCCCAGTGTT 659
|||||||||||||||||||||| |||||| | | |||||| |||||| |||||||||
Sbjct 648 AGTGAAACCATGTCCGGCCTTTTATCAGTTTGAGTTTGATTACACTCATAACCCAGTGTT 707
Query 660 TATGACGGAGCATGAAGGAGACATCTTTGTTATTTATA 697
||||||||||||||||||||||||||||| |||| |||
Sbjct 708 TATGACGGAGCATGAAGGAGACATCTTTGATATT-ATA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5