BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346315
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 926 0.0
AT1G30455.1 | Symbols: | transcription regulators;translation ... 473 2e-132
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding pro... 154 2e-36
> AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr2:18595348-18598438 REVERSE LENGTH=1820
Length=1820
Score = 926 bits (501), Expect = 0.0
Identities = 695/781 (89%), Gaps = 43/781 (6%)
Strand=Plus/Plus
Query 517 GTGAAAATTGTGCATATATGCGAAGCAACTCTAACTAAAAGATTGATTGAGTTTGGAAAT 576
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 873 GTGAACATTGTGCATATATGCGAAGCAACCCTAACTAAAAGATTGATTGAGTTTGGAGAT 932
Query 577 ACCGAGGCTGCAAGTTTTACTGCTGATGAGCTCAGTAAAACTGAAAGAGAAAGaaaaaaa 636
||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||
Sbjct 933 ACCGAGGCTGCAAGTTTGACTGCAGATGAGCTCAGTAAAACTGAAAGAGAAA-AAGAAAC 991
Query 637 GAAACGGAATTGCGTAGTAAAAGGAATCC-AATTTCTTACAAAGAAGGAGTAGTGCTCTG 695
| | | |||||| ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 992 G--GCTGCATTGCGAAGTAAAAGGAAGCCAAATTT-TTACAAAGAAGGAGTAGTGCTCTG 1048
Query 696 TATGCATCAAGATTGTAAACCTGTTGATTATGGATTATGTAAGAGCTGTTACGATGAGTT 755
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1049 TATGCATCAAGATTGTAAACCTGTTGATTATGGATTATGTGAGAGCTGTTACGATGAATT 1108
Query 756 CATGAAAGTTTCTGGTGGACTTGAAGGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGA 815
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CATGACAGTTTCTGGTGGACTTGAAGGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGA 1168
Query 816 GAAAGAGAGAATGGAGGAAAAAGCTTCTAGAGAAGAAAACGACAAACAACTAAATTCGGA 875
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct 1169 GAAAGAGAGAATGGAGGAAAAAGCTTCTAGTGAAGAAAACGACAAACAAGTAAATTTGGA 1228
Query 876 TGGACATTCGGATGAATCAAGCACCTTGTCTGACGTTGATGATAGAGAGTCTGATCGTTT 935
|||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 1229 TGGACATTCGGATGAATCAAGCACCTTGTCTGACGTCGATGATAGAGAGT-TG---G--- 1281
Query 936 CACTGTTTCCCAGTTGGATTGTTATTTTCGGAAC-CCAGAAGAAGTGCGCCAGGTTGAGA 994
| | | ||| ||| || |||| | |||||||||||||||| |||| |||
Sbjct 1282 -A-T-T------GTT--ATT-TT-----CGGA-CGCCAGAAGAAGTGCGCCTGGTTAAGA 1323
Query 995 TCGTCTTTGATCTAAC-AAA-CCCCGAATATAATGAGAAGGAAGCAGCTAAGGAAGCAGC 1052
|| ||||||||| | | ||| ||||| |||| |||||||||||||||||||| |||||||
Sbjct 1324 TCTTCTTTGATC-A-CGAAAACCCCGGATATGATGAGAAGGAAGCAGCTAAGAAAGCAGC 1381
Query 1053 AGCTTTAAACGCGAGCAATAATGCAAGCAACCTTTTCGAAGCTTCTAAAGCAGCTGCGGC 1112
|| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1382 AGGTTTAAATGCTTGCAATAATGCAAGCAACATTTTCGAAGCTTCTAAAGCAGCTGCGGC 1441
Query 1113 GAAATCTAGAAAAGAAAAACGACAACAACGTGCTGAGGAAGAAAAGAACGCGCCTCCTCC 1172
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1442 GAAATCTAGAAAAGAAAAACGACAACAACGCGCTGAGGAAGAAAAGAACGCTCCTCCTCC 1501
Query 1173 TGCTACAGCCATGGAAGCTGTTGGTAGAATGGTCAAGAGAAAGAAATTTCGCGGA-ATTC 1231
||||||| ||| |||||||||| ||| ||||||||||||||||||||||||| | |||
Sbjct 1502 AGCTACAGGCATAGAAGCTGTTGATAGCATGGTCAAGAGAAAGAAATTTCGCG-ATATTA 1560
Query 1232 ACTGCGAATATTTGGAT---CTT---GATACTTCAGCTGAGAAATCACCCAAGAGATCGA 1285
||||||| |||||||| ||| ||| | |||| |||||||||||||||||||||||
Sbjct 1561 ACTGCGATTATTTGGAGGAGCTTTTTGATGCGTCAGTTGAGAAATCACCCAAGAGATCGA 1620
Query 1286 A 1286
|
Sbjct 1621 A 1621
Score = 793 bits (429), Expect = 0.0
Identities = 448/457 (98%), Gaps = 2/457 (0%)
Strand=Plus/Plus
Query 31 AAGGAAGCAGCTAAGAAAGCAGCAGGTTTAAACGCTTGCAATAATGCAAGCAACATTTTC 90
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1359 AAGGAAGCAGCTAAGAAAGCAGCAGGTTTAAATGCTTGCAATAATGCAAGCAACATTTTC 1418
Query 91 GAAGCTTCTAAAGCAGCTGCGGCGAAATCTAGAAAAGAAAAACGACAACAACGCGCTGAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GAAGCTTCTAAAGCAGCTGCGGCGAAATCTAGAAAAGAAAAACGACAACAACGCGCTGAG 1478
Query 151 GAAGAAAAGAACGCTCCTCCTCCAGCTACAGCCATAGAAGCTGTTGATAGCATGGTCAAG 210
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1479 GAAGAAAAGAACGCTCCTCCTCCAGCTACAGGCATAGAAGCTGTTGATAGCATGGTCAAG 1538
Query 211 AGAAAGAAATTTCGCAGA-ATTAACTGCGATTATTTGGAGGAGCTTCTTGATGCGTCAGC 269
||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1539 AGAAAGAAATTTCGC-GATATTAACTGCGATTATTTGGAGGAGCTTTTTGATGCGTCAGT 1597
Query 270 TGAGAAATCACCCAAGAGATCGAAAACCGAGACAGTGATGgagaagaagaagaaggaaga 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 TGAGAAATCACCCAAGAGATCGAAAACCGAGACAGTGATGGAGAAGAAGAAGAAGGAAGA 1657
Query 330 gcatgagattgttgaaaacgaacaagaggaagaagaCTACGCGGCACCATACGAACAAGA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GCATGAGATTGTTGAAAACGAACAAGAGGAAGAAGACTACGCGGCACCATACGAACAAGA 1717
Query 390 TGAAGAAGACTACGCGGCACCATACGAGATGAACACAGATGAGAAATTCTATGAAAGCGA 449
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1718 TGAAGAAGACTACGCGGCACCATACGAGATGAACACAGATAAGAAATTCTATGAAAGCGA 1777
Query 450 AGTGGAAGAGGAAGAGGATGGTTACGAGTTTGGATTG 486
||| ||||||||||||||||||||||| |||||||||
Sbjct 1778 AGTAGAAGAGGAAGAGGATGGTTACGATTTTGGATTG 1814
Score = 187 bits (101), Expect = 2e-46
Identities = 109/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1316 ACGAACAAGATGAAGAAGACTACGCGGTACCATACGAGATGAACACAGATGAGAAATTCT 1375
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1708 ACGAACAAGATGAAGAAGACTACGCGGCACCATACGAGATGAACACAGATAAGAAATTCT 1767
Query 1376 ATGAAGGCGAAGTGGAAGAGGAAGAGGATGGTTACGATTTTGGATTGTATTAA 1428
||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1768 ATGAAAGCGAAGTAGAAGAGGAAGAGGATGGTTACGATTTTGGATTGTATTAA 1820
Score = 117 bits (63), Expect = 3e-25
Identities = 67/69 (97%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1284 GAAGAAGAAGGAAGAGCATGAGATTGTTGAAAACGAACAAGATGAAGAAGACTACGCGGT 1343
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1643 GAAGAAGAAGGAAGAGCATGAGATTGTTGAAAACGAACAAGAGGAAGAAGACTACGCGGC 1702
Query 1344 ACCATACGA 1352
|||||||||
Sbjct 1703 ACCATACGA 1711
> AT1G30455.1 | Symbols: | transcription regulators;translation
initiation factors;zinc ion binding;transcription activators
| chr1:10769722-10770775 FORWARD LENGTH=765
Length=765
Score = 473 bits (256), Expect = 2e-132
Identities = 309/334 (93%), Gaps = 5/334 (1%)
Strand=Plus/Plus
Query 43 AAGAAAGCAGCAGGTTTAAACGCTTGCAATAATGCAAGCAACATTTTCGAAGCTTCTAAA 102
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 433 AAGGAAGCAGCAGCTTTAAACGCTTGCAATAATGCAAGCAACCTTTTCGAAGCTTCTAAA 492
Query 103 GCAGCTGCGGCGAAATCTAGAAAAGAAAAACGACAACAACGCGCTGAGGAAGAAAAGAAC 162
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 493 GCAGCGGCGGCGAAATCTAGAAAAGATAAACGACAACAACGTGCTGAGGAAGAAAAGAAC 552
Query 163 GCTCCTCCTCCAGCTACAGCCATAGAAGCTGTTGATAGCATGGTCAAGAGAAAGAAATTT 222
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 GCGCCTCCTCCAGCTACAGCCATGGAAGCTGTTGATAGCATGGTCAAGAGAAAGAAATTT 612
Query 223 CGCAGA-ATTAACTGCGATTATTTGGAGGAGCTTCTTGATGCGTCAGCTGAGAAATCACC 281
| | || | ||||||||||||||||||||||||||||||| | |||||| ||||| || |
Sbjct 613 CCC-GATACTAACTGCGATTATTTGGAGGAGCTTCTTGATACTTCAGCTCAGAAAGCATC 671
Query 282 CAAGAGATCGAAAACCGAGACAGTGATGgagaagaagaagaaggaagagcatgagattgt 341
|||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 672 CAAGAGATTGAAAACCGAGACAGTGATGGAGAAGAACAAG--G-AAGAGCATGAGATTGT 728
Query 342 tgaaaacgaacaagaggaagaagaCTACGCGGCA 375
|||||||||||| || |||||||| |||||||||
Sbjct 729 TGAAAACGAACAGGATGAAGAAGATTACGCGGCA 762
Score = 403 bits (218), Expect = 2e-111
Identities = 482/593 (81%), Gaps = 83/593 (14%)
Strand=Plus/Plus
Query 781 GGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCT 840
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GGTGGCTCGGATCCTCCCTCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCT 279
Query 841 TCTAGAGAAGAAAACGACAAACAACTAAATTCGGATGGACATTCGGATGAATCAAGCACC 900
|||| |||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 280 TCTACAGAAGAAAACGACAAACAAC---A-----A---A-ATTCGGATGAATCAAGCACT 327
Query 901 TTGTCTGACGTTGATGATAGAGAGTCTGATCGTTTCACTGTTTCCCAGTTGGATTGTTAT 960
||||||||| | ||| || || | | | ||||||||||||||
Sbjct 328 TTGTCTGAC-CT--CGAT---GA---TG---G----A--G------AGTTGGATTGTTAT 363
Query 961 TTTCGGAACCCAG-AAGAAGTGCGCCAGGTTGAGATCGTCTTTGATCTAAC--AAACCCC 1017
||||||||||| | ||||||||| || ||||||||| ||||||||| || |||||||
Sbjct 364 TTTCGGAACCC-GAAAGAAGTGCACCTGGTTGAGATTATCTTTGATC--ACGAAAACCCC 420
Query 1018 GAATATAATGAGAAGGAAGCAGCTAAGGAAGCAGCAGCTTTAAACGCGAGCAATAATGCA 1077
| || || || | || ||||||||||||||||||||||| |||||||||||
Sbjct 421 G--GAT-AT------GATG-AG--AAGGAAGCAGCAGCTTTAAACGCTTGCAATAATGCA 468
Query 1078 AGCAACCTTTTCGAAGCTTCTAAAGCAGCTGCGGCGAAATCTAGAAAAGAAAAACGACAA 1137
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 469 AGCAACCTTTTCGAAGCTTCTAAAGCAGCGGCGGCGAAATCTAGAAAAGATAAACGACAA 528
Query 1138 CAACGTGCTGAGGAAGAAAAGAACGCGCCTCCTCCTGCTACAGCCATGGAAGCTGTTGGT 1197
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 529 CAACGTGCTGAGGAAGAAAAGAACGCGCCTCCTCCAGCTACAGCCATGGAAGCTGTTGAT 588
Query 1198 AGAATGGTCAAGAGAAAGAAATTTCGCGGA-ATTCACTGCGAATATTTGGA-----T-CT 1250
|| |||||||||||||||||||||| || | | | ||||||| |||||||| | ||
Sbjct 589 AGCATGGTCAAGAGAAAGAAATTTCCCG-ATACTAACTGCGATTATTTGGAGGAGCTTCT 647
Query 1251 TGATACTTCAGCTGAGAAATCACCCAAGAGAT------C-GA-A--G--A---AGAAG-- 1293
||||||||||||| ||||| || ||||||||| | || | | | |||||
Sbjct 648 TGATACTTCAGCTCAGAAAGCATCCAAGAGATTGAAAACCGAGACAGTGATGGAGAAGAA 707
Query 1294 ---G-AAGAGCATGAGATTGTTGAAAACGAACAAGATGAAGAAGACTACGCGG 1342
| |||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 708 CAAGGAAGAGCATGAGATTGTTGAAAACGAACAGGATGAAGAAGATTACGCGG 760
> AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-149394 FORWARD LENGTH=2257
Length=2257
Score = 154 bits (83), Expect = 2e-36
Identities = 126/145 (87%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 1284 GAAGAAGAAGGAAGAGCATGAGATTGTTGAAAACGAACAAGATGAAGAAGACTACGCGGT 1343
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
Sbjct 1512 GAAGAAGAAGGAAGAGCATGAGATTGTTGAAGATGAAGAAGATGAAGAAGACTACGCAGC 1571
Query 1344 ACCATACGAGATGAACACAGATGAGAAATTCTATGAAGGCGAAGTGGAAGAGGAAGAGGA 1403
|||| ||| || |||||||| |||||||||| ||||||||||||||||||| |
Sbjct 1572 ACCACACG-------CA--GATGAGAACTTCTATGAAGACGAAGTGGAAGAGGAAGAGAA 1622
Query 1404 TGGTTACGATTTTGGATTGTATTAA 1428
|||||| ||||||||||||||||||
Sbjct 1623 TGGTTATGATTTTGGATTGTATTAA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5