BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346338
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45340.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3332 0.0
> AT2G45340.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:18691722-18694725 FORWARD LENGTH=2352
Length=2352
Score = 3332 bits (1804), Expect = 0.0
Identities = 1990/2081 (96%), Gaps = 7/2081 (0%)
Strand=Plus/Plus
Query 1 ATGGcctctccactctcactctttctcatcctcttcttcttcttcttcctttctccttca 60
|||| |||||||||| ||||||||||||| | | |||||||||||||||||||| || ||
Sbjct 18 ATGGTCTCTCCACTCACACTCTTTCTCAT-C-C-TCTTCTTCTTCTTCCTTTCTTCTGCA 74
Query 61 ctgtcttcctcctcaTCGGAGCTTGACATTCTCCTCGATATCAAATCCTCTCTCGACCCT 120
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 75 CTGTCTTCCTCCTCCTCAGAGCTCGACATTCTCCTCGATATCAAATCCTCTCTCGACCCT 134
Query 121 GAAAAACGTTTCCTTACTTCATGGACTCCCGACGCTGACCCTTGCTCCTCTGGCTCCTTC 180
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 135 GAAAAACGTTTCCTCACTTCATGGACTCCCGACGCCGACCCTTGCTCCTCTGGCTCCTTC 194
Query 181 GACGGTGTCGCTTGCGACGGAAACCGCCGTGTTGCTAACATCTCTCTTCAAGGAATGGGT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GACGGTGTCGCGTGCGACGGAAACCGCCGTGTTGCTAACATCTCTCTTCAAGGAATGGGT 254
Query 241 CTCACTGGAACTATCCCTCCATCAATCGGTCTTCTCACTAGCTTAACTGGTTTATACCTT 300
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 255 CTCACTGGAACTATCCCTCCTTCAATCGGTCTTCTCACAAGCTTAACCGGTTTATACCTT 314
Query 301 CACTTCAACTCCTTGACCGGTCATATTCCTAAAGATATGTCAAATCTGCCTCTCCTCACC 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 315 CACTTCAACTCCTTGACCGGTCATATTCCTAAAGATATCTCAAATCTGCCTCTCCTCACC 374
Query 361 GATTTATACCTCAATGTCAACAATCTCTCCGGCGAAATCCCTCCTCAAATCGGAAACTTA 420
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 375 GATTTATACCTCAATGTCAACAATCTCTCCGGTGAAATCCCTCCTCTAATCGGGAACTTA 434
Query 421 GACAATCTTCAAGTTATACAGTTATGTTACAACAAGTTAAGTGGAAGTATACCGACACAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GACAATCTTCAAGTTATACAGTTATGTTACAACAAGTTAAGTGGAAGTATACCGACACAG 494
Query 481 TTAGGTTCTCTTAAGAAGATAACTGTCTTGGCTTTACAGTATAACCAACTCTCCGGCGCC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTTGGTTCTCTTAAGAAGATAACTGTCTTGGCTTTACAGTATAACCAACTCTCCGGCGCC 554
Query 541 ATTCCGGCGAGTTTAGGTGATA-TAAGTACGTTAACGAGACTTGATTTGAGCTTCAACAA 599
||||||||||||||||| |||| | | |||||||||||| ||||||||||||||||||||
Sbjct 555 ATTCCGGCGAGTTTAGGCGATATTGA-TACGTTAACGAGGCTTGATTTGAGCTTCAACAA 613
Query 600 TCTCTTTGGTCCTGTGCCTGTGAAACTCGCCGGTGCTCCTTTGCTTGAAGTTCTCGACAT 659
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CCTCTTTGGTCCTGTTCCGGTGAAACTCGCCGGTGCTCCTTTGCTTGAAGTTCTCGACAT 673
Query 660 TCGTAATAACTCTTTCTCAGGCTTCGTTCCCTTTGCTTTGAAGAGGCTAAACAATGGATT 719
|||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 674 TCGTAATAACTCCTTCTCCGGCTTCGTTCCCTCTGCTTTGAAGAGGCTAAACAATGGATT 733
Query 720 CCAGTATTCAAACAATCACGGTTTATGCGGAGATGGGTTCACGGATTTGAATGCTTGCAC 779
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 734 CCAGTATTCAAACAATCACGGTTTATGCGGAGATGGTTTCACTGATTTGAAAGCTTGCAC 793
Query 780 CGGTTTAAACGGTCCGAA-CCTAAACCGGCCAGACCCAACAAACCCAACGAATTTCACAA 838
||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 794 CGGCTTAAACGGTCCGAACCCT-AACCGACCAGACCCAACAAACCCAACGAATTTCACAA 852
Query 839 CCGTTGACGTGAAACCAGAATCGGCAGATTTACAACGAAGCAATTGCAGTAACAACAATG 898
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 853 CAGTTGACGTGAAACCAGAATCAGCAGATTTACAACGAAGCAATTGCAGTAACAACAATG 912
Query 899 GCGGGTGTTCATCAAAAACCTCAAAGTCTTCACCTTTAGGAATCGTCATGGGTCTTATGG 958
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |
Sbjct 913 GCGGGTGTTCATCAAAATCCTTAAAGTCTTCACCTTTAGGAATCGTCATGGGTCTAATAG 972
Query 959 GTTCAATCCTCGCAGTTGCAATCTTTGGTGGTTCAACATTCACATGGTACAGACGAAGGA 1018
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 973 GATCAATCCTCGCAGTTGCAATCTTTGGCGGTTCAACATTCACATGGTACAGACGAAGGA 1032
Query 1019 AACAAAAGATTGGAAGCAGTCTTGATGCAATGGACGGTAGGATTAGCACTGAGTACAACT 1078
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1033 AACAGAAGATTGGAAGCAGTCTTGATGCAATGGACGGTAGGATTAGTACTGAGTACAACT 1092
Query 1079 TCAAAGAAGTTTCTAGAAGAAAAAGCTCTTCTCCATTGATCAGCCTAGAGTATGCAAGTG 1138
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1093 TCAAAGAAGTTTCTAGAAGAAAAAGCTCTTCTCCATTGATCAGCTTAGAGTACGCAAGTG 1152
Query 1139 GTTGGGATCCGTTAGGACGAGGACAGAGCAGTAACAACAACAGTGCATTGTCTCAAGAAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GTTGGGATCCGTTAGGACGAGGACAGAGCAGTAACAACAACAGTGCATTGTCTCAAGAAG 1212
Query 1199 TCTTTGAGAGCTTTATGTTCAATCTTGAGGAGATTGAGAGAGCTACTCAGAGCTTCTCTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TCTTTGAGAGCTTTATGTTCAATCTTGAGGAGATTGAGAGAGCTACTCAGAGCTTCTCTG 1272
Query 1259 AGGTTAACTTGTTGGGGAAGAGTAATGTATCTTCGGTTTATAAAGGTATCCTTAGAGATG 1318
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1273 AGATTAACTTGTTGGGGAAGAGTAATGTCTCTTCAGTTTATAAAGGTATCCTTAGAGATG 1332
Query 1319 GTTCTGTTGCAGCTGTAAAATGTATAGCGAAATCGAGCTGTAAATCCGATGAATCCGAGT 1378
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1333 GTTCTGTTGCAGCTATCAAATGTATAGCTAAATCGAGCTGTAAATCCGATGAATCCGAGT 1392
Query 1379 TTCTCAAAGGGTTGAAGACGCTGACATTGTTGAAGCATGAGAATTTAGTGAGGTTGAGAG 1438
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1393 TTCTCAAAGGGTTGAAGATGCTGACACTGTTGAAGCATGAGAATTTAGCGAGGTTGAGAG 1452
Query 1439 GATTCTGCTGCTCAAAAGGACGTGGAGAATGTTTCCTTATCTATGAGTTTGTCCCCAATG 1498
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1453 GATTCTGCTGCTCGAAAGGACGTGGAGAATGTTTCCTTATCTATGAGTTTGTTCCCAATG 1512
Query 1499 GTAATCTTTTGCAGTATCTTGATGTGAAGGATGAGACTGGAGAGGTTCTCGAATGGACAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1513 GTAATCTTTTGCAGTATCTTGATGTGAAGGATGAGACTGGAGAGGTTCTTGAATGGGCAA 1572
Query 1559 CTCGAGTTTCCATCATTAATGGCATCGCCAGAGGGATTGTTTACCTACATGGAGAAAATG 1618
|||||||||||||||| || || ||||||||||||||||| ||| | |||||||||||||
Sbjct 1573 CTCGAGTTTCCATCATAAACGGAATCGCCAGAGGGATTGTGTACTTGCATGGAGAAAATG 1632
Query 1619 GAAACAAGCCTGCAATAGTTCACCAGAATCTATCTGCAGAGAAGATTCTCATTGATCATT 1678
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1633 GGAACAAACCTGCAATAGTTCACCAGAATCTATCTGCAGAGAAGATTCTCATTGATCACT 1692
Query 1679 GGTATAATCCTTCTCTTGCGGATTCCGGTCTTCACAAGCTTTTCACGGATGACATCGTTT 1738
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1693 GGTATAATCCTTCTCTTGCAGATTCCGGTCTTCACAAGCTTTTCACAGATGATATCGTTT 1752
Query 1739 TCTCGAAGCTCAAAGCAAGTGCGGCAATGGGATACTTAGCTCCTGAGTACATAACTACAG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 TCTCGAAGCTCAAAGCAAGTGCGGCAATGGGATACTTAGCTCCTGAGTACATAACTACAG 1812
Query 1799 GGAGGTTTACTGATAAGAGCGACGTGTATGCCTTTGGTATGATTCTGTTGCAGATACTGA 1858
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1813 GGAGGTTCACTGATAAGAGCGATGTTTATGCATTTGGTATGATTCTGTTGCAGATACTGA 1872
Query 1859 GTGGTAAAAGCAAAATCAGCCATTTGATGATCTTACAAGCTGTAGAGTCAGGAAGACTGA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 GTGGTAAAAGCAAAATCAGCCATTTGATGATCTTACAAGCTGTAGAGTCAGGAAGACTGA 1932
Query 1919 ATGAAGACTTCATGGATCCAAATCTTCGAAAGAACTTCCCGGAAGCAGAAGCAGCTGAGC 1978
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1933 ATGAAGACTTCATGGATCCAAATCTTCGAAAGAACTTCCCGGAAGTAGAAGCGGCTCAGC 1992
Query 1979 TCGCTAGACTTGGTCTTCTCTGCACCCATGAATCCTCAAACCAGAGACCATCCATGGAAG 2038
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1993 TCGCTAGACTTGGTCTTCTCTGCACTCATGAATCCTCAAACCAAAGACCATCCATGGAAG 2052
Query 2039 ACGTTATGCAAGAACTGAACAAACTCGCAGCGAATTATTAG 2079
| ||||| ||||||||||| || ||||| ||| ||||||||
Sbjct 2053 ATGTTATCCAAGAACTGAATAATCTCGCCGCGGATTATTAG 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103061718885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5