BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346342
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45340.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2364 0.0
> AT2G45340.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:18691722-18694725 FORWARD LENGTH=2352
Length=2352
Score = 2364 bits (1280), Expect = 0.0
Identities = 1431/1503 (95%), Gaps = 13/1503 (1%)
Strand=Plus/Plus
Query 21 GCTTGATTTGAGCTTCAACAACCTCTTTGGTCCTGTTCCGGTGAAACTCGCTGGTGCTCC 80
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 GCTTGATTTGAGCTTCAACAACCTCTTTGGTCCTGTTCCGGTGAAACTCGCCGGTGCTCC 652
Query 81 TTTGCTTGAAGTTCTCGACATTCGTAATAAC-CCTT-TGCCGGCTTCGTT-CC-CT-C-- 133
||||||||||||||||||||||||||||||| |||| | ||||||||||| || || |
Sbjct 653 TTTGCTTGAAGTTCTCGACATTCGTAATAACTCCTTCT-CCGGCTTCGTTCCCTCTGCTT 711
Query 134 T---GAGGCTAAACAATGGATTCCAGTATTCAAACAATCACGGTTTATGCGGAGATGGGT 190
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 712 TGAAGAGGCTAAACAATGGATTCCAGTATTCAAACAATCACGGTTTATGCGGAGATGGTT 771
Query 191 TCACGGATTTGAATGCTTGCACCGGTTTAAACGGTCCGAA-CCTAAACCGGCCAGACCCA 249
|||| |||||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||
Sbjct 772 TCACTGATTTGAAAGCTTGCACCGGCTTAAACGGTCCGAACCCT-AACCGACCAGACCCA 830
Query 250 ACAAACCCAACGAATTTCACAACCGTTGACGTGAAACCAGAATCAGCAGATTTACAACGA 309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 831 ACAAACCCAACGAATTTCACAACAGTTGACGTGAAACCAGAATCAGCAGATTTACAACGA 890
Query 310 AGCAATTGCAGTAACAATAATGGCGTGTGTTCATCAAAAACCTCAAAGTCTTCACCTTTA 369
||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 891 AGCAATTGCAGTAACAACAATGGCGGGTGTTCATCAAAATCCTTAAAGTCTTCACCTTTA 950
Query 370 GGAATCGTCATGGGTCTTATGGGTTCAATCCTCGCAGTTGCAATCTTTGGTGGTTCAACA 429
||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 951 GGAATCGTCATGGGTCTAATAGGATCAATCCTCGCAGTTGCAATCTTTGGCGGTTCAACA 1010
Query 430 TTCACATGGTACAGACGAAGGAAACAAAAGATTGGAAGCAGTCTTGATGCAATGGACGGT 489
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1011 TTCACATGGTACAGACGAAGGAAACAGAAGATTGGAAGCAGTCTTGATGCAATGGACGGT 1070
Query 490 AGGATTAGCACTGAGTACAACTTCAAAGAAGTTTCTAGAAGAAAAAGCTCTTCTCCATTG 549
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGGATTAGTACTGAGTACAACTTCAAAGAAGTTTCTAGAAGAAAAAGCTCTTCTCCATTG 1130
Query 550 ATCAGCCTAGAGTATGCAAGTGGTTGGGATCCGTTAGGACGAGGACAGAGCAGTAACAAC 609
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATCAGCTTAGAGTACGCAAGTGGTTGGGATCCGTTAGGACGAGGACAGAGCAGTAACAAC 1190
Query 610 AACAGTGCATTGTCTCAAGAAGTCTTTGAGAGCTTTATGTTCAATCTTGAGGAGAATGAG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1191 AACAGTGCATTGTCTCAAGAAGTCTTTGAGAGCTTTATGTTCAATCTTGAGGAGATTGAG 1250
Query 670 AGAGCTACTCAGAGCTTCTCTGAGGTTAACTTGTTGGGGAAGAGTAATGTCTCTTCGGTT 729
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1251 AGAGCTACTCAGAGCTTCTCTGAGATTAACTTGTTGGGGAAGAGTAATGTCTCTTCAGTT 1310
Query 730 TATAAAGGTATCCTTAGAGATGGTTCTGTTGCAGCTGTAAAATGTATAGCGAAATCGAGC 789
|||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 1311 TATAAAGGTATCCTTAGAGATGGTTCTGTTGCAGCTATCAAATGTATAGCTAAATCGAGC 1370
Query 790 TGTAAATCCGACGAATCCGAGTTTCTCAAAGGGTTGAAGATGCTGACATTGTTGAAGCAT 849
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1371 TGTAAATCCGATGAATCCGAGTTTCTCAAAGGGTTGAAGATGCTGACACTGTTGAAGCAT 1430
Query 850 GAGAATTTAGTGAGGTTGAGAGGATTCTGCTGCTCAAAAGGACGTGGAGAATGTTTCCTT 909
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1431 GAGAATTTAGCGAGGTTGAGAGGATTCTGCTGCTCGAAAGGACGTGGAGAATGTTTCCTT 1490
Query 910 ATCTATGAGTTTGTCCCCAATGGTAATCTTTTGCAGTATCTTGATGTGAAGGATGAGACT 969
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 ATCTATGAGTTTGTTCCCAATGGTAATCTTTTGCAGTATCTTGATGTGAAGGATGAGACT 1550
Query 970 GGAGAGGTTCTCGAATGGACAACTCGAGTTTCCATCATTAATGGCATCGCCAGAGGGATT 1029
||||||||||| |||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 1551 GGAGAGGTTCTTGAATGGGCAACTCGAGTTTCCATCATAAACGGAATCGCCAGAGGGATT 1610
Query 1030 GTTTACCTACATGGAGAAAATGGAAACAAGCCTGCAATAGTTCACCAGAATCTATCTGCA 1089
|| ||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1611 GTGTACTTGCATGGAGAAAATGGGAACAAACCTGCAATAGTTCACCAGAATCTATCTGCA 1670
Query 1090 GAGAAGATTCTCATTGATCATTGGTATAATCCTTCTCTTGCGGATTCCGGTCTTCACAAG 1149
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1671 GAGAAGATTCTCATTGATCACTGGTATAATCCTTCTCTTGCAGATTCCGGTCTTCACAAG 1730
Query 1150 CTTTTCACGGATGACATCGTTTTCTCGAAGCTCAAAGCAAGTGCGGCAATGGGATACTTA 1209
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CTTTTCACAGATGATATCGTTTTCTCGAAGCTCAAAGCAAGTGCGGCAATGGGATACTTA 1790
Query 1210 GCTCCTGAGTACATAACTACAGGGAGGTTTACTGATAAGAGCGACGTGTATGCCTTTGGT 1269
||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1791 GCTCCTGAGTACATAACTACAGGGAGGTTCACTGATAAGAGCGATGTTTATGCATTTGGT 1850
Query 1270 ATGATTCTGTTGCAGATACTGAGTGGTAAAAGCAAAATCAGCCATTTGATGATCTTACAA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGATTCTGTTGCAGATACTGAGTGGTAAAAGCAAAATCAGCCATTTGATGATCTTACAA 1910
Query 1330 GCTGTAGAGTCAGGAAGACTGAATGAAGACTTCATGGATCCAAATCTTCGAAAGAACTTC 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GCTGTAGAGTCAGGAAGACTGAATGAAGACTTCATGGATCCAAATCTTCGAAAGAACTTC 1970
Query 1390 CCGGAAGCAGAAGCAGCTGAGCTCGCTAGACTTGGTCTTCTCTGCACCCATGAATCCTCA 1449
||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1971 CCGGAAGTAGAAGCGGCTCAGCTCGCTAGACTTGGTCTTCTCTGCACTCATGAATCCTCA 2030
Query 1450 AACCAGAGACCATCCATGGAAGACGTTATGCAAGAACTGAACAAACTCGCAGCGAATTAT 1509
||||| ||||||||||||||||| ||||| ||||||||||| || ||||| ||| |||||
Sbjct 2031 AACCAAAGACCATCCATGGAAGATGTTATCCAAGAACTGAATAATCTCGCCGCGGATTAT 2090
Query 1510 TAG 1512
|||
Sbjct 2091 TAG 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5