BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346362
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 948 0.0
> AT2G45520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; Has 260 Blast hits to 238 proteins in 75 species:
Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants
- 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI
BLink). | chr2:18755045-18756302 REVERSE LENGTH=816
Length=816
Score = 948 bits (513), Expect = 0.0
Identities = 585/620 (94%), Gaps = 4/620 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGGGAAAGGAAAAAAGAGGAGAGAGAAAAACTACCTAGCTGCCCACGGCGGACCG 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 35 ATGGGAGGGAAAGGAAAAAAGAGGAGAGAGAAAAATTACCTAGCTGCTCACGGCGGACCG 94
Query 61 GCGAGACTTCCGCCGCCGCCTGATCGTTCGAAGCAAGATGATGTTCCTTCTAAGCTCCGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 95 GCGAGACTTCCGCCGCCGCCTGATCGTTCGAAGCAAGATGATGTTCCTTCTACGCTCCGT 154
Query 121 ATTCTCATGAACTACACTTCTCCGTCTCCTCACGATTCTACTAAACAAGTCGTAGAGAAG 180
|| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 155 ATCCTCATGAACTACACTTCTCCTTCTCCCCATGATTCTACTAAACAAGTCGTAGAGAAG 214
Query 181 AAGGAAAAGATTAAGAAATCCGAAGAAGATGTTACTGCAACGGAGAGTGATGGAGATGAT 240
||||||||| |||||||| | |||| || |||| ||||||||||||||||||||||||||
Sbjct 215 AAGGAAAAGCTTAAGAAAGCTGAAGTAGTTGTTCCTGCAACGGAGAGTGATGGAGATGAT 274
Query 241 TGTGTGGTGgagaggaagaagaaaaagagaaagagaaaTCAAATGACGGATCTTCGTTTC 300
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 275 AGTGTGGTGGAGAAGAAGAAGAAAAAGAGGAAGAGAAATCAAATGACGGATCTTCGTTTT 334
Query 301 GAAAATGAACTTGCGGAG-TTGGATGGTCGGTCTaaaaggaaagaacgcaagaagaagta 359
||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 335 GAAAACGAACTTGCAGAGATT-GATGGTCGGTCTAAAAGGAAAGAACGCAAGAAGAAGTA 393
Query 360 ttgggaggccaagaaacaaaagaagaatcaaggaaagaCTGAAGATACCCTCCGTGAAAA 419
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 TTGGGAGGCCAAGAAGCAAAAGAAGAATAAAGGAAAGACTGAAGATACCCTCCGTGAAAA 453
Query 420 CTTCCCCAAGCATGAACAGATAAGATTTGGTGATGTTGTGCAAGCTCCACCTAAGTTGGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 CTTCCCCAAGCATGAACAGATAAGATTTGGTGATGTTGTGCAAGCTCCACTTAAGTTGGC 513
Query 480 TGTGGTTCCAAAGGCAAGAAAGTCTACTCTAAGTGCTTCCCAGGAGAGGCTGCGATTAGA 539
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 514 TGTTGTTCCGAAGGCAAGAAAGTCTACTCTAAGTGCTTCCCAGGAGAGGCTGCGATTACA 573
Query 540 GGCCATCGATGCTTACAGATCTCGCAAGGGATGGATCGCAAGACCAGGTGTTCCCATTCC 599
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||
Sbjct 574 AGCCATCGATGCTTACAGATCACGCAAGGGATGGACCGCTAGACCAGGTGTTCCGATTCC 633
Query 600 TGCCGTTG-TCATGCAATAA 618
|||||| | | |||||||||
Sbjct 634 TGCCGT-GATGATGCAATAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5