BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346389

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01800.1 | Symbols:  | COP1-interacting protein-related | ch...   176    1e-43
  AT4G00580.1 | Symbols:  | COP1-interacting protein-related | ch...   159    1e-38
  AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase...   104    5e-22


> AT2G01800.1 | Symbols:  | COP1-interacting protein-related | 
chr2:343766-345254 REVERSE LENGTH=915
Length=915

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 118/129 (91%), Gaps = 2/129 (2%)
 Strand=Plus/Plus

Query  167  TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  226
            ||||||| |||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  740  TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  799

Query  227  AGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCA-GCACTCCGACTAAAGTAGATGCT  285
            |||||||||| |||||||||||| ||||||||| || | ||||||||||||| ||||| |
Sbjct  800  AGAAGCCTAAAAAGAAAAAAAGAGCAAAGAAAGTCAAG-ACTCCGACTAAAGAAGATGGT  858

Query  286  CTAGTTGCT  294
            |||||||||
Sbjct  859  CTAGTTGCT  867


> AT4G00580.1 | Symbols:  | COP1-interacting protein-related | 
chr4:248713-250258 FORWARD LENGTH=954
Length=954

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 116/130 (89%), Gaps = 4/130 (3%)
 Strand=Plus/Plus

Query  167  TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT  225
            |||| ||| |||||||||||| |   ||||||||||||||||||||||||||||||||||
Sbjct  695  TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT  753

Query  226  GAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCA-GCACTCCGACTAAAGTAGATGC  284
            ||||||||||| |||||||| ||| ||||||||| || | ||||||||||||| ||||| 
Sbjct  754  GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAG-ACTCCGACTAAAGAAGATGG  812

Query  285  TCTAGTTGCT  294
            ||||||||||
Sbjct  813  TCTAGTTGCT  822


> AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE 
LENGTH=699
Length=699

 Score =  104 bits (56),  Expect = 5e-22
 Identities = 84/96 (88%), Gaps = 7/96 (7%)
 Strand=Plus/Plus

Query  167  TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT  223
            |||| ||| ||||||| || |  || | ||||||||||||||||||||||||||||||||
Sbjct  440  TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT  496

Query  224  CTGAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAG  259
            ||||||||||||| ||||||||  || |||||||||
Sbjct  497  CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAG  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5