BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346451

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46490.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   641    0.0  


> AT2G46490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G35110.1); 
Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19079406-19080053 
FORWARD LENGTH=648
Length=648

 Score =  641 bits (347),  Expect = 0.0
 Identities = 373/386 (97%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCC  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  52   ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCC  111

Query  61   GCCATCGAGCGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGC  120
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  112  GCCATCGAACGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGT  171

Query  121  GGCGCTGGGAAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  172  GGCGCTGGGAAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA  231

Query  181  GAGAGCATTTCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAat  240
            |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  232  GAGAGCATCTCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAAT  291

Query  241  ctcttctcctcatcgtcgtcttcttctaatctccaatcgctttcgtcgtcttcttctctc  300
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  292  CTCTTCTCCTCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCTTCGTCTTCTTCGCTC  351

Query  301  tcaaatctGGCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCT  360
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  352  TCAAATCTGGCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCT  411

Query  361  AGTAAGCAGCTACGATGGACGATTGA  386
            | ||| ||||||||||||||||||||
Sbjct  412  AATAAACAGCTACGATGGACGATTGA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5