BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346452

Length=819
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase ...   159    3e-38
  AT2G46730.1 | Symbols:  | pseudogene, similar to 68 kDa protein...  56.5    4e-07


> AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase 
2 | chr2:19076405-19078386 REVERSE LENGTH=1587
Length=1587

 Score =  159 bits (86),  Expect = 3e-38
 Identities = 130/151 (86%), Gaps = 3/151 (2%)
 Strand=Plus/Plus

Query  324   GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC  383
             |||||| || |||| |||||||||||| | | |||||||||||||| | |  ||||||||
Sbjct  1047  GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC  1106

Query  384   CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC  443
              ||||| ||||||||| || || ||||||||   || |||||||||||||||||||||||
Sbjct  1107  AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC  1163

Query  444   TCCCCTGTGGTCCATAGATCTTAAAGGGAAA  474
             |||||| |||||||| |||||||||||||||
Sbjct  1164  TCCCCTATGGTCCATTGATCTTAAAGGGAAA  1194


> AT2G46730.1 | Symbols:  | pseudogene, similar to 68 kDa protein, 
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420 
68 kDa protein {Cicer arietinum} 
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279

 Score = 56.5 bits (30),  Expect = 4e-07
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  442   ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAA  474
             ||| |||||||||||||||||||||||||||||
Sbjct  1968  ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAA  2000



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39885912718


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5