BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg346452 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase ... 159 3e-38 AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 56.5 4e-07 > AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase 2 | chr2:19076405-19078386 REVERSE LENGTH=1587 Length=1587 Score = 159 bits (86), Expect = 3e-38 Identities = 130/151 (86%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 324 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 383 |||||| || |||| |||||||||||| | | |||||||||||||| | | |||||||| Sbjct 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106 Query 384 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 443 ||||| ||||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163 Query 444 TCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474 |||||| |||||||| ||||||||||||||| Sbjct 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAA 1194 > AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein, blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420 68 kDa protein {Cicer arietinum} | chr2:19200860-19203138 FORWARD LENGTH=2279 Length=2279 Score = 56.5 bits (30), Expect = 4e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 442 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474 ||| ||||||||||||||||||||||||||||| Sbjct 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAA 2000 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5