BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346472
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46620.1 | Symbols: | P-loop containing nucleoside triphosp... 1005 0.0
> AT2G46620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19138801-19140747
REVERSE LENGTH=1947
Length=1947
Score = 1005 bits (544), Expect = 0.0
Identities = 590/612 (96%), Gaps = 3/612 (0%)
Strand=Plus/Plus
Query 505 GATCTAGATCGATACCTCTCGACGAAATCAACGGCTGTGAGTTTATCTGGGATTTTGAAT 564
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1069 GATCTAGATCGACACCTCTCGACGAAATCAACGGCTGTGAATTTATCTGGGATTTTGAAT 1128
Query 565 TTCACTGATAGTATTCTCAGTTCTTGCACCGCCGATGAACGGGTCATGGTGTTCACGATG 624
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 1129 TTCACTGATAGTATTCTCAGCTCTTGCACCGCCGATGAACGGATCATGGTGTTTACGATG 1188
Query 625 ACTGGGAAAGAACAAATTGACCCGGCTATGCTTCGACCGGGTCGGGTCGACGTACACATT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ACTGGGAAAGAACAAATTGACCCGGCTATGCTTCGACCGGGTCGGGTCGACGTACACATT 1248
Query 685 CATTTTCCGTTATGTGATTTCACGGCGTTTAAAACGCTGGCTAATAACTACTTAGGTGTT 744
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1249 CATTTTCCCTTATGTGATTTCACGGCGTTTAAAACGCTCGCTAATAACTACTTAGGTGTT 1308
Query 745 AAAGAGCACAAGCTTTTCTCTCAAGTTGAAGGAATATTTCAAAACGGTGCGTCTTTGAGT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AAAGAGCACAAGCTTTTCTCTCAAGTTGAAGGAATATTTCAAAACGGTGCGTCTTTGAGT 1368
Query 805 CCCGCCGAGATCGGAGAATTGATGATCGCGAATCGTAGCTCGCCGACTCGTGCGTTGAAG 864
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1369 CCCGCCGAGATCGGAGAGTTGATGATCGCGAATCGTAACTCGCCGACTCGTGCATTGAAG 1428
Query 865 TATGTCATCAATGCTTTGCAGACTGATGGAGATCGGAGAGGAACTGGACGACGTTTGCTT 924
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1429 CATGTCATCAATGCTTTGCAGACTGATGGTGATCGGAGAGGAACTGGACGACGTTTGCTT 1488
Query 925 TTAGAAAGCGGTTCGAGAAAATCGACGTCGGAGGATGTTTCCGATGATATGAGTGGTTCG 984
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1489 TTAGAAAATGGTTCGAGAAAGTCGACGTCGGAGGATGTTTCTGATGATATGAGTGGTTCG 1548
Query 985 CTTTGCGGCGGTGGCGGAGGAGGAAGTTCGCCGGCGGTGAAGGAGTTTAGGAAGTTGTAT 1044
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1549 CTTTGCGGCGGTGGCGGAGGA--A-GTTCGCCGGCGGTGAAGGAGTTTAGGAAGTTGTAT 1605
Query 1045 GGGTTATTGAGGATTAAAAGTAGTAGAAAATCTGGATCGTTCGATGTGGCTAGAGAGATG 1104
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1606 GGGTTGTTGAGAATTAAAAGTAGTAGAAAATCTGGATCGTTCGATGTGGCTCGAGAGATG 1665
Query 1105 AGGGACGGCTAG 1116
||||||||||||
Sbjct 1666 AGGGACGGCTAG 1677
Score = 795 bits (430), Expect = 0.0
Identities = 483/508 (95%), Gaps = 6/508 (1%)
Strand=Plus/Plus
Query 1 ATGGGGATTCTCTGGGATTCGTTTCTCTTCTTACTTGTAG-CAAC-TCTCGCTCTGTTCT 58
||||||||||| ||||||||||||||||| |||||||| | |||| | | ||||||||||
Sbjct 202 ATGGGGATTCTTTGGGATTCGTTTCTCTTGTTACTTGT-GTCAACGT-TTGCTCTGTTCT 259
Query 59 TAGTTAGGATCGTGTTATTCAAAACAGGATTAATTTACATGGTGAAGTTATGGCGGAGGA 118
||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 260 TAGTTAGGATCCTGTTATTCAAAACTGGATTGATTTACATGGTCAAGTTATGGCGTAGGA 319
Query 119 AGATCATCGACTGGTTTCATGTTTACCAATTCTACAAAGTCCCAGAATTCAACGACAACG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGATCATCGACTGGTTTCATGTTTACCAATTCTACAAAGTCCCAGAATTCAACGACAACG 379
Query 179 TGCAAGAGAATCATCTCTATCAAAAAGTATAC-TCGTATCTAAATTCCTTAAGCTCAATC 237
| ||||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |||
Sbjct 380 TTCAAGAGAATCATCTCTACCAAAAAGTCTACAT-GTATCTAAATTCCTTAAGCTCGATC 438
Query 238 GAGAATTCTGATTTCACGAATCTCTTCACCGGAAAAAAGTCCAACGAAATCATCCTCCGG 297
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 439 GAGAATTCTGATTTCACGAACCTCTTCACCGGGAAAAAGTCCAACGAAATCATCCTCCGG 498
Query 298 TTAGATCGGAACCAAGTCGTTGGCGACGAGTTTCTCGGCGCTAGAGTTTGTTGGATTAAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TTAGATCGGAACCAAGTCGTTGGCGACGAGTTTCTCGGCGCTAGAGTTTGTTGGATTAAC 558
Query 358 GGAGAAGACGATGACGGAGCGAGGAATTTCGTTTTGAAGATTCGTAAAGCTGATAAACGG 417
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 559 GGAGAAGACGAAGATGGAGCGAGGAATTTCGTTTTGAAGATTCGTAAAGCTGACAAACGG 618
Query 418 AGAATTCTCGGCCCTTATCTCCAGCATATACATACAGTATCTGATGAGCTTGAACAGAGG 477
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 AGAATTCTCGGTTCTTATCTCCAGCATATACATACAGTATCTGATGAGCTTGAACAGAGG 678
Query 478 AACACAGAGCTTAAGCTTTTCATCAACG 505
||||||||||||||||||||||||||||
Sbjct 679 AACACAGAGCTTAAGCTTTTCATCAACG 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5