BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346476

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73860.1 | Symbols:  | P-loop containing nucleoside triphosp...   207    4e-53


> AT1G73860.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr1:27770986-27776857 
REVERSE LENGTH=3460
Length=3460

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 143/158 (91%), Gaps = 2/158 (1%)
 Strand=Plus/Plus

Query  44    CATCAACTTCAGATGTGATTACATTGATGGACATTGGTCTAAAGAATCGAGTCGTTGGTT  103
             ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct  2240  CATCAACTTCAGATGTGATTACATTGATGGACATTGGACTACAGAATCGAGCCGTTGGTT  2299

Query  104   CTACTGCCTTGAATGAAAGAAGAAGTCGCTCCCAGAGCATTGTCATTGTTCACGTTCGCG  163
             |||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||
Sbjct  2300  CTACTGCCTTGAATGAAAGAAGTAGTCGTTCACATAGCATTGTCACTGTTCACGTTCGCG  2359

Query  164   GCATAGATTTTAAA-ACCGGTTATGTGCTATATGGTAA  200
             | | |||||| ||| |||||||  |||||||| |||||
Sbjct  2360  GTAAAGATTT-AAAGACCGGTTCCGTGCTATACGGTAA  2396


 Score =  143 bits (77),  Expect = 1e-33
 Identities = 83/86 (97%), Gaps = 0/86 (0%)
 Strand=Plus/Plus

Query  196   GGTAAAGACGTTCGAGACTTAATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA  255
             |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  2725  GGTAAAGATGTTCGAGACTTGATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA  2784

Query  256   AAAGACAAAGAGATAGAGAGACTTCA  281
             |||||| |||||||||||||||||||
Sbjct  2785  AAAGACGAAGAGATAGAGAGACTTCA  2810



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5