BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346483
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46720.1 | Symbols: HIC, KCS13 | 3-ketoacyl-CoA synthase 13 ... 2266 0.0
AT3G10280.1 | Symbols: KCS14 | 3-ketoacyl-CoA synthase 14 | chr... 2152 0.0
> AT2G46720.1 | Symbols: HIC, KCS13 | 3-ketoacyl-CoA synthase 13
| chr2:19197383-19200221 FORWARD LENGTH=2839
Length=2839
Score = 2266 bits (1227), Expect = 0.0
Identities = 1336/1390 (96%), Gaps = 2/1390 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGATTTCAAGCTTCTTTTGCTTATACTCATCCTTCTGTCTCTCTTTGAACTTGAT 60
|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1451 ATGGCAGATTTCAAAATTCTTTTGCTTATACTCATCCTTATATCTCTCTTTGAACTTGAT 1510
Query 61 CTACTTCATTTTCACCATGACTTCTTCTCTTCTTTTTGGGTCAAGATCGGTTTACTCATG 120
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 1511 CTACTTCATTTTCACCATGACTTCTTCTCTCCTTTTCCGGTCAAGATCGGTTTACTCCTG 1570
Query 121 ATAGCCATCTTCTTCTATGCCTACTCAACCACCAGGTCTAAACCGGTTTACCTCGTGGAT 180
||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1571 ATATCCATCTTCTTCTATGCCTACTCAACCACCCGGTCTAAACCGGTTTACCTAGTGGAT 1630
Query 181 TTCTCATGTCACCAACCCACCGACTCATGCAAAATCTCGTCGGAAACGTTCTTCAACATG 240
|||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 1631 TTCTCATGTCACCAACCCACGGATTCTTGCAAAATCTCATCCGAAACGTTCTTCAACATG 1690
Query 241 GCCAAAGGCGCTCAACTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTAAAC 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1691 GCCAAAGGCGCTCAACTCTACACCGATGAAACAATCCAATTCATGACGAGGATATTAAAC 1750
Query 301 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 1810
Query 361 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTAATCTTCGGAGCTCTTAACTCA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1811 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTTATCTTCGGAGCTCTTAACTCA 1870
Query 421 CTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 CTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGC 1930
Query 481 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATTGTAAACCGGTACAAGCTCAAAACC 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1931 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATCGTAAACCGGTACAAGCTTAAAACC 1990
Query 541 GACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTTGAC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1991 GACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTCGAC 2050
Query 601 CTCGCCACAAATCTACTTAAGGCAAACCCGAATACCTACGCAGTTATTGTTAGCACGGAG 660
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2051 CTCGCCACAAATCTACTAAAGGCAAACCCTAATACCTACGCAGTTATTGTTAGTACGGAG 2110
Query 661 AACATGACTCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTACCTAACTGTCTA 720
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2111 AACATGACCCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTCCCTAACTGTCTA 2170
Query 721 TTCCGAGTAGGTGGGGCTGCGGTTTTGCTCTCAAACCGGA-TCCAAGACCGATTCCGGTC 779
|||||||||||||| ||||||||| ||||||||||||||| || |||||||| |||||||
Sbjct 2171 TTCCGAGTAGGTGGCGCTGCGGTTATGCTCTCAAACCGGAGTC-AAGACCGAGTCCGGTC 2229
Query 780 TAAGTACGAATTGACTCATCTCGTAAGGACTCACAAAGGCTCTAGCGATAAACATTACAC 839
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 2230 TAAGTACGAATTGACTCATATTGTAAGGACTCACAAAGGCTCTAGCGATAAACACTACAC 2289
Query 840 TTGTGCTGAACAAAAAGAAGATAATAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 899
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2290 TTGTGCTGAACAAAAAGAAGATAGTAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 2349
Query 900 AACGGTTGTTGCTGGTGACACATTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTTTT 959
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 2350 AACGGTTGTTGCTGGTGACTCGTTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTGTT 2409
Query 960 GCCTTTATCTGAAAAGCTCCGGTTTATCATCTTTATGGTAAAGAGTAAGCTTTTCCGGTT 1019
||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2410 GCCTTTATCTGAAAAACTCCGGTTTATCCTCTTTTTGGTAAAGAGTAAGCTTTTCCGGTT 2469
Query 1020 AAAAGTTAGTCCGTATGTTCCGAATTTTAAACTATGTTTCAAGCATTTATGTATTCACGC 1079
||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 2470 AAAGGTTAGTCCATATGTTCCGGATTTTAAACTATGTTTCAAGCATTTCTGTATTCACGC 2529
Query 1080 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2530 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 2589
Query 1140 TGAGCCGTCTCGGATGACTTTGCACCGCTTCGGAAACACCTCAAGCTCGTCTCTGTGGTA 1199
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 2590 TGAGCCGTCTCGGATGACTTTGCACCGCTTTGGAAACACTTCAAGCTCGTCGCTGTGGTA 2649
Query 1200 CGAGCTGGCTTACGTGGAGGCTAAGTGTCGGGTCAAACGAGGAGATCGGGTTTGGCAGTT 1259
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2650 CGAGCTGGCTTACGTGGAGGCTAAATGTCGGGTCAAACGAGGAGATAGGGTTTGGCAGTT 2709
Query 1260 GGCGTTCGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCC 1319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2710 GGCGTTTGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCC 2769
Query 1320 GGCGAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCAGTTCATAAGTATCCAGTTCA 1379
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2770 GGCTAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCGGTTCATAAGTATCCAGTTCA 2829
Query 1380 CGTGACCTAA 1389
||||||||||
Sbjct 2830 CGTGACCTAA 2839
> AT3G10280.1 | Symbols: KCS14 | 3-ketoacyl-CoA synthase 14 | chr3:3180064-3181588
FORWARD LENGTH=1380
Length=1380
Score = 2152 bits (1165), Expect = 0.0
Identities = 1319/1390 (95%), Gaps = 23/1390 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGATTTCAAGCTTCTTTTGCTTATACTCATCCTTCTGTCTCTCTTTGAACTTGAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 13 ATGGCAGATTTCAAGCTTCTTTTGCTTATACTCATCCTTCTATCTCTCTTTGAACTTGAT 72
Query 61 CTACTTCATTTTCACCATGACTTCTTCTCTTCTTTTTGGGTCAAGATCGGTTTACTCATG 120
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 73 CTACTTCACTTTCACCATGACTTCTTCTCTCCTTTTCCGGTCAAGATCGGTTTACTCCTG 132
Query 121 ATAGCCATCTTCTTCTATGCCTACTCAACCACCAGGTCTAAACCGGTTTACCTCGTGGAT 180
||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 133 ATATCCATCTTCTTCTATGCCTACTCAACCACCCGGTCTAAACCGGTTTACCTAGTGGAT 192
Query 181 TTCTCATGTCACCAACCCACCGACTCATGCAAAATCTCGTCGGAAACGTTCTTCAACATG 240
|||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 193 TTCTCATGTCACCAACCCACGGATTCTTGCAAAATCTCATCCGAAACGTTCTTCAACATG 252
Query 241 GCCAAAGGCGCTCAACTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTAAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCCAAAGGCGCTCAACTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTAAAC 312
Query 301 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 372
Query 361 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTAATCTTCGGAGCTCTTAACTCA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 373 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTCATCTTCGGAGCTCTTAACTCA 432
Query 421 CTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGC 480
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 CTATTTAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATCGTAAACTGCAGC 492
Query 481 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATTGTAAACCGGTACAAGCTCAAAACC 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 493 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATCGTAAACCGGTACAAGCTTAAAACC 552
Query 541 GACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTTGAC 600
||||||||||||||||| ||| | | || | | ||||||||| |||
Sbjct 553 GACGTCAAAACTTACAA--TCT-C---------T------CC-G-G-AATCTCCGTGGAC 591
Query 601 CTCGCCACAAATCTACTTAAGGCAAACCCGAATACCTACGCAGTTATTGTTAGCACGGAG 660
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 592 CTCGCCACAAATCTACTAAAGGCAAACCCTAATACCTACGCAGTTATTGTTAGTACGGAG 651
Query 661 AACATGACTCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTACCTAACTGTCTA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 652 AACATGACTCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTCCCTAACTGTCTA 711
Query 721 TTCCGAGTAGGTGGGGCTGCGGTTTTGCTCTCAAACCGGA-TCCAAGACCGATTCCGGTC 779
|||||||||||||| ||||||||| ||||||||||||||| | ||||||||| |||||||
Sbjct 712 TTCCGAGTAGGTGGCGCTGCGGTTATGCTCTCAAACCGGAGT-CAAGACCGAGTCCGGTC 770
Query 780 TAAGTACGAATTGACTCATCTCGTAAGGACTCACAAAGGCTCTAGCGATAAACATTACAC 839
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 771 TAAGTACGAATTGACTCATATTGTAAGGACTCACAAAGGCTCTAGCGATAAACACTACAC 830
Query 840 TTGTGCTGAACAAAAAGAAGATAATAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 899
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 831 TTGTGCTGAACAAAAAGAAGATAGTAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 890
Query 900 AACGGTTGTTGCTGGTGACACATTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTTTT 959
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 AACGGTTGTTGCTGGTGACACGTTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTTTT 950
Query 960 GCCTTTATCTGAAAAGCTCCGGTTTATCATCTTTATGGTAAAGAGTAAGCTTTTCCGGTT 1019
||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 951 GCCTTTATCTGAAAAACTCCGGTTTATCCTCTTTTTGGTAAAGAGTAAGCTTTTCCGGTT 1010
Query 1020 AAAAGTTAGTCCGTATGTTCCGAATTTTAAACTATGTTTCAAGCATTTATGTATTCACGC 1079
||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1011 AAAGGTTAGTCCATATGTTCCGGATTTTAAACTATGTTTCAAGCATTTCTGTATTCACGC 1070
Query 1080 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 1130
Query 1140 TGAGCCGTCTCGGATGACTTTGCACCGCTTCGGAAACACCTCAAGCTCGTCTCTGTGGTA 1199
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1131 TGAGCCGTCTCGGATGACTTTGCACCGCTTTGGAAACACTTCAAGCTCGTCGCTGTGGTA 1190
Query 1200 CGAGCTGGCTTACGTGGAGGCTAAGTGTCGGGTCAAACGAGGAGATCGGGTTTGGCAGTT 1259
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1191 CGAGCTGGCTTACGTGGAGGCTAAATGTCGGGTCAAACGAGGAGATAGGGTTTGGCAGTT 1250
Query 1260 GGCGTTCGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCC 1319
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1251 GGCGTTTGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCATTGAGAACGATTCC 1310
Query 1320 GGCGAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCAGTTCATAAGTATCCAGTTCA 1379
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1311 GGCTAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCGGTTCATAAGTATCCAGTTCA 1370
Query 1380 CGTGACCTAA 1389
||||||||||
Sbjct 1371 CGTGACCTAA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5