BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346489
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1413 0.0
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 117 2e-25
> AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229293-19231505 FORWARD LENGTH=1696
Length=1696
Score = 1413 bits (765), Expect = 0.0
Identities = 941/1022 (92%), Gaps = 28/1022 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCAACAGAGACAATTTCAGATGGAAGGtaataataataataataCGAAC-GATAC 59
|||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||
Sbjct 224 ATGGCTCAACAGAGACAATTTCAGATGGAAGG---TGGTAATAATAATAC-AACAGATAC 279
Query 60 CAAGTTGACGAAAATCTTCGTGGGAGGATTGGCGTGGGAGACGCAGAGAGATACAATGAG 119
|||||||||||||||||| || |||||||| || |||||||| |||||||||||||||||
Sbjct 280 CAAGTTGACGAAAATCTTTGTTGGAGGATTAGCTTGGGAGACTCAGAGAGATACAATGAG 339
Query 120 ACGTTACTTTGAACAGTTTGGTGATATCGTTGAAGCTGTCGTTATTACTGATAAGAACAC 179
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 340 ACGTTACTTTGAACAGTTTGGTGAAATCGTTGAAGCTGTTGTCATTACTGATAAGAACAC 399
Query 180 TGGAAGATCCAAAGGATATGGATTTGTGACGTTTAAGGAAGCTGAAGCAGCGATGAGAGC 239
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 400 TGGAAGATCTAAAGGATATGGATTTGTCACGTTTAAGGAAGCTGAAGCAGCGATGAGAGC 459
Query 240 TTGTCAGAATATGAATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTCGCTTGTCT 299
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 460 TTGTCAGAACATGAATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTGTCT 519
Query 300 TGGTGCTCAAAAACCTCGTCCTCCTACTTCTCCTAGACATGGAGGAACAGGTAGATTCAG 359
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 520 TGGTGCTCAAAAACCTCGTCCTCCTACTTCTCCTCGACAT---GGAACAGGTAGATTCAG 576
Query 360 ATCACCAGGATCAGGAGTTGGATTAGTTGCTCCTTCTCCTCAGTTTCGAGGCTCTTCTTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ATCACCAGGATCAGGAGTTGGATTAGTTGCTCCTTCTCCTCAGTTTCGAGGCTCTTCTTC 636
Query 420 TTCCCCTGCTTTTG-T--TC--C-TCAACAACAACACACTGGTCAATTCCCATTTCCTTA 473
|||| ||||||||| | || | |||||||||||||||| ||||||||||||||||||
Sbjct 637 TTCCTCTGCTTTTGTTCATCAACAACAACAACAACACACTGCTCAATTCCCATTTCCTTA 696
Query 474 CTCTACTTACGGGTTTTCTGGTTATTCTCAAGAGGGAATGTACCCAATGAACTACTACAA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTCTACTTACGGGTTTTCTGGTTATTCTCAAGAGGGAATGTACCCAATGAACTACTACAA 756
Query 534 TCATCATCTCTATGGAGGACAACAATTTTCACCGTATATGGGACATCCATCATCAGGATC 593
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 757 TCATCATCTCTATGGAGGACAACAGTTTTCACCATATATGGGACATCCATCAGCAGGATC 816
Query 594 AACAGGAATGTTCCAAGGATTTTA-CCCTTTCTATGCTCAATACAATGCAGCACAAAGTA 652
||||||||||||||| || ||||| |||| |||| ||||||||||||||||||||||||
Sbjct 817 AACAGGAATGTTCCATGGTTTTTATCCCTA-CTATCCTCAATACAATGCAGCACAAAGTA 875
Query 653 GCAATCAGGCACAAGCTCAAGTTCAAGCTCAACATCACCAAGGTTTCAGCTTTCAATACA 712
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GCAATCAAGCTCAAGCTCAAGTTCAAGCTCAACATCACCAAGGTTTCAGCTTTCAATACA 935
Query 713 CTGCTCCTCCTGCTGCTCCTTTACTGCAATATCCTTACTTGCCTCATCAGCAACACTTCA 772
|||||||||||||| ||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct 936 CTGCTCCTCCTGCTCCTCCTCTGCTGCAATATCCTTACTTGCCTCACCAGCCACACTTCA 995
Query 773 GTTCTCAGCAGCAATTCAGCTCTCATCAGCCTCCTCCTCCAATCCTCTCCCTCCCAACCT 832
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 996 GTTCTCAGCAGCAATTTAGCTCTCAGCAACCTCCTCCTCCAATCCTCTCCCTCCCAACCT 1055
Query 833 CTTTAGCTCTATCACTACCATCAACTTCATCACCATCCTCATCAACATCCACCTCAGCTG 892
|| | |||||||| |||| ||| | |||||||| ||||| ||||| |||||||||||||
Sbjct 1056 CTCTGGCTCTATCTTTACCTTCATCATCATCACCGTCCTCTTCAACTTCCACCTCAGCTG 1115
Query 893 CAACAA-A--AACA------GTAGTTATTACTGCAGCAACAAAGAATGCAGCAACAGCTG 943
|||||| | |||| |||||||| ||| ||||||||||||| |||| || | |||
Sbjct 1116 CAACAACAGCAACAAAAACAGTAGTTATAACTACAGCAACAAAGAAAGCAG-AA-A-CTG 1172
Query 944 AAACTAGCACCAAAGATGGTGATGAAGCAATTACAACATCAACCACCAAGATAGAGGGTT 1003
|| |||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 1173 AAGCTAGCAGCAAAGATGGTAATGAAGCAATGACAACATCAACCATCAAGATAGAGGGTT 1232
Query 1004 GA 1005
||
Sbjct 1233 GA 1234
> AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262043-7265438 REVERSE LENGTH=2091
Length=2091
Score = 117 bits (63), Expect = 2e-25
Identities = 135/169 (80%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 138 TGGTGATATCGTTGAAGCTGTCGTTATTACTGATAAGAACACTGGAAGATCCAAAGGATA 197
|||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 745 TGGTGATATCCTTGAGGCTGTCGTTATTACTGATAAGAACACTGGTCGATCCAAAGGTTA 804
Query 198 TGGATTTGTGACGTTTAAG-GAAGCTGAAGCAGCGATGAGAGC-T-TGTCAGAATATGA- 253
||| |||||||| ||| | || | || || || | |||||| | |||| || | |
Sbjct 805 TGGCTTTGTGAC-TTTCCGAGATCCAGAGGCTGCTAGGAGAGCCTGTGTC-GA-TCCAAC 861
Query 254 ATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTCGCTTGTCTTGG 302
| ||| | || ||||| ||| |||| ||||| |||||||||| ||||||
Sbjct 862 A-CCTATTATAGATGGCAGACGAGCGAATTGTAATCTCGCTTCTCTTGG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5