BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346509
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 2... 699 0.0
AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 3... 424 6e-118
> AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible
20 | chr2:19307855-19308990 FORWARD LENGTH=655
Length=655
Score = 699 bits (378), Expect = 0.0
Identities = 482/528 (91%), Gaps = 24/528 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGGAGAAGTTCATCGTCTTCGTCGATAGAGAGTAGCAGCAAGAGCAACCCA 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 7 ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCA 66
Query 61 TTCGGTGGTTCATCAAGTACTCGGAACCTAAGCACGGACCTGAGGCTCGGACTCAGCTTC 120
||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 67 TTCGGTGCTTCGTCAAGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCAGCTTC 126
Query 121 GGGAAATCCTCAGGGACTCAATATTTTAACGGTGGTTAT-GG------G-T--A-CT-C- 167
|||| ||||||||||||||||||||| |||||||| ||| || | | | || |
Sbjct 127 GGGACATCCTCAGGGACTCAATATTTCAACGGTGGCTATGGGTACTCCGTTGCAGCTCCG 186
Query 168 -C-GT------TGC---AGCTCCGGCGGCAGAGGAGGAGGAAGAAGAGAACGAGTGTAAC 216
| || ||| | | |||||| | |||||||||||||||||| |||||||||
Sbjct 187 GCGGTAGAGGATGCGGAATATGTGGCGGCTGTGGAGGAGGAAGAAGAGAATGAGTGTAAC 246
Query 217 AGTGTAGGGAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 276
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 306
Query 277 GATCTAATGTCTCTTAATGGCTACCACGACTTGATCAGAACCCTAGATTTCATGTTCAAC 336
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 307 GATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTGATTTCATGTTCAAC 366
Query 337 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAACGAGAAGAGTCATGTGCTAACG 396
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 367 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGAGTCACGTGCTAACG 426
Query 397 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGGGATGTTCCTTGGGAGATGTTCTTG 456
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTG 486
Query 457 TCTACTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 504
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TCTACTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 534
> AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible
30 | chr3:22995791-22996761 FORWARD LENGTH=731
Length=731
Score = 424 bits (229), Expect = 6e-118
Identities = 435/529 (82%), Gaps = 35/529 (7%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGGAGAAGTTCATCGTCTTCGTCGATAGAGAGTAGCAGCAAGAGCAACCCA 60
||||||||||||||||| ||||||||||| ||||||||||| ||| |||| |||||||||
Sbjct 45 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 104
Query 61 TTCGGTGGT-TCATC-A--AGTACTCGGAACCTAAGCACGGACCTGAGGCTCGGACTCAG 116
|| ||| || || || | | ||||||||||||||||||||||||||| ||||| |||||
Sbjct 105 TTTGGT-GTGTCTTCGAGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAG 163
Query 117 CTTCGGGA-AATCCTCAGGGACTCAATATTTTAACGGT-G-GTTATGGGT-ACTCCGTTG 172
|||| ||| ||| || ||| ||||||| |||||| | | || | | | | ||
Sbjct 164 CTTC-GGATCATCTTC-CGGA--CAATATTACAACGGTGGAGATAACCATGAATATGATG 219
Query 173 CAGCTCCG-GCGGCAGAGG--A-G--G---A--G--GAAGAAGAG---AACGAGTGTAAC 216
|| || | |||||||||| | | | | | ||||||||| |||||||||||
Sbjct 220 GAG-TCGGTGCGGCAGAGGAAATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAAT 278
Query 217 AGTGTAGGGAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 276
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 279 AGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATC 338
Query 277 GATCTAATGTCTCTTAATGGCTACCACGACTTGATCAGAACCCTAGATTTCATGTTCAAC 336
||||| | ||||||||||| || || || ||||||| ||| || || | |||||||||
Sbjct 339 GATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTCGACTACATGTTCAAT 398
Query 337 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAACGAGAAGAGTCATGTGCTAACG 396
|| || || || ||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct 399 GCTTCAATCCTTTGGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACG 458
Query 397 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGGGATGTTCCTTGGGAGATGTTCTTG 456
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 459 TACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTG 518
Query 457 TCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 504
|||| | ||||||||||| ||||| ||||||||| || | ||||||||
Sbjct 519 TCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTACTGA 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5